Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU184331 |
| length | 162 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G162303 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 10491446 ~ 10491607 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU184385 | lncRNA | upstream | 570 | 10297673 ~ 10490876 (+) | True | G162355 |
| TU184768 | lncRNA | upstream | 40363 | 10450489 ~ 10451083 (+) | True | G162679 |
| TU184431 | lncRNA | upstream | 61899 | 10422929 ~ 10429547 (+) | True | G162401 |
| TU184682 | lncRNA | upstream | 87430 | 10106728 ~ 10404016 (+) | True | G162605 |
| TU184749 | lncRNA | upstream | 118548 | 10357103 ~ 10372898 (+) | True | G162661 |
| TU184338 | lncRNA | downstream | 3796 | 10505439 ~ 10511059 (+) | False | CI01000030_10473378_10509560 |
| TU184337 | lncRNA | downstream | 5928 | 10507571 ~ 10511059 (+) | True | CI01000030_10473378_10509560 |
| TU184396 | lncRNA | downstream | 12245 | 10513888 ~ 10515816 (+) | True | G162366 |
| TU184784 | lncRNA | downstream | 20661 | 10522304 ~ 10533874 (+) | False | G162694 |
| TU184785 | lncRNA | downstream | 20661 | 10522304 ~ 10564317 (+) | False | G162694 |
| CI01000030_10422761_10426202.mRNA | mRNA | upstream | 65194 | 10422652 ~ 10426252 (+) | True | CI01000030_10422761_10426202 |
| CI01000030_10333687_10335629.mRNA | mRNA | upstream | 155654 | 10333518 ~ 10335792 (+) | True | CI01000030_10333687_10335629 |
| CI01000030_10304328_10313568.mRNA | mRNA | upstream | 177819 | 10304328 ~ 10313627 (+) | True | CI01000030_10304328_10313568 |
| CI01000030_10259762_10274068.mRNA | mRNA | upstream | 217277 | 10259714 ~ 10274169 (+) | True | CI01000030_10259762_10274068 |
| CI01000030_10246173_10256836.mRNA | mRNA | upstream | 234534 | 10244410 ~ 10256912 (+) | True | CI01000030_10246173_10256836 |
| CI01000030_10537146_10539791.mRNA | mRNA | downstream | 34548 | 10536191 ~ 10540258 (+) | False | CI01000030_10537146_10539791 |
| CI01000030_10540503_10543066.mRNA | mRNA | downstream | 38653 | 10540296 ~ 10543215 (+) | True | CI01000030_10540503_10543066 |
| CI01000030_10567314_10570556.mRNA | mRNA | downstream | 62751 | 10564394 ~ 10570573 (+) | True | CI01000030_10567314_10570556 |
| CI01000030_10581114_10588932.mRNA | mRNA | downstream | 78970 | 10580613 ~ 10589621 (+) | True | CI01000030_10581114_10588932 |
| CI01000030_10596446_10602032.mRNA | mRNA | downstream | 94574 | 10596217 ~ 10603637 (+) | True | CI01000030_10596446_10602032 |
| TU184320 | other | upstream | 270222 | 10221095 ~ 10221224 (+) | True | G162297 |
| TU184321 | other | upstream | 355887 | 10133299 ~ 10133763 (+) | True | G162297 |
| TU184353 | other | upstream | 445563 | 10042793 ~ 10042887 (+) | True | G162323 |
| TU184486 | other | upstream | 1134432 | 9356403 ~ 9357014 (+) | False | G162449 |
| TU184485 | other | upstream | 1134432 | 9356559 ~ 9357014 (+) | False | G162449 |
| TU184890 | other | downstream | 236938 | 10738581 ~ 10740551 (+) | True | CI01000030_10738658_10751094 |
| TU184924 | other | downstream | 364369 | 10866012 ~ 10868440 (+) | True | G162821 |
| TU184823 | other | downstream | 839112 | 11340755 ~ 11340925 (+) | True | G162730 |
| TU185083 | other | downstream | 990958 | 11492601 ~ 11496119 (+) | True | G162951 |
