RNA id: TU181022


Basic Information

Item Value
RNA id TU181022
length 472
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G159452
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3643990 ~ 3644461 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAACAACTCTTGATTTCTCCAACAAGTAGGTCCTCATGTTTGCCCCAATTATATCCCCTTTACGACCAAATCCTATCTCAATATACTTCCCAAAACGGCTGCTGTTGTCGTTTCTGGTTGTTTTTGCATTACCGATTGCCTGTAAGGATTAAAGTAATAGAAATTAATTGAATTATTAATAAACAGCTTCCTCCTGCTTTACCAAAAAGGCCATAAATCAAGTTTTAGTACCTCCATGATGGGATTGGATGCCAAAACTTTCTCCTCCACACTGGTCTGCTGGGCCGCACCCCCCACAACAGCAAAGTAACGCATGGTGTACTTAGCAGATACAGTTTTACCTGAGCCTGATTCTCCACTGATTATGATGGATTGGTTTTTCTCCTCTCTGTATATATAATTATGATTAAAACCATATGTTTTGGTTAAAGTAATGTAATACCAATTCAGAATGAAAGTTTATATTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181006 lncRNA upstream 81697 3561516 ~ 3562293 (+) True G159437
TU181003 lncRNA upstream 96252 3547520 ~ 3547738 (+) True G159434
TU181002 lncRNA upstream 96960 3545393 ~ 3547030 (+) True G159433
TU180988 lncRNA upstream 110722 3532793 ~ 3533268 (+) True G159420
TU180986 lncRNA upstream 112386 3531334 ~ 3531604 (+) True G159418
TU181023 lncRNA downstream 518 3644979 ~ 3645233 (+) True G159453
TU181028 lncRNA downstream 45588 3690049 ~ 3690431 (+) True G159458
TU181029 lncRNA downstream 46771 3691232 ~ 3691471 (+) True G159459
TU181030 lncRNA downstream 47372 3691833 ~ 3692126 (+) True G159460
TU181031 lncRNA downstream 47917 3692378 ~ 3692627 (+) True G159461
CI01000030_03594936_03629403.mRNA mRNA upstream 14505 3594936 ~ 3629485 (+) True CI01000030_03594936_03629403
CI01000030_03580764_03584676.mRNA mRNA upstream 58735 3580764 ~ 3585255 (+) True CI01000030_03580764_03584676
CI01000030_03565934_03569916.mRNA mRNA upstream 73260 3565785 ~ 3570730 (+) True CI01000030_03565934_03569916
CI01000030_03253246_03261669.mRNA mRNA upstream 382047 3253246 ~ 3261943 (+) True CI01000030_03253246_03261669
CI01000030_03238201_03242662.mRNA mRNA upstream 401088 3237992 ~ 3242902 (+) False CI01000030_03238201_03242662
CI01000030_03703231_03704355.mRNA mRNA downstream 57712 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
CI01000030_03715463_03716370.mRNA mRNA downstream 70150 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
CI01000030_03744173_03745628.mRNA mRNA downstream 99030 3743491 ~ 3745741 (+) True CI01000030_03744173_03745628
CI01000030_03765594_03778884.mRNA mRNA downstream 120601 3765062 ~ 3779032 (+) True CI01000030_03765594_03778884
CI01000030_03825765_03826754.mRNA mRNA downstream 180954 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
TU180187 other upstream 600217 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1029697 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1361620 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2005763 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2637303 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 787339 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 872317 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3555474 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4209624 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4593504 8237965 ~ 8239604 (+) True G162088

Expression Profile