RNA id: CI01000034_01675050_01677339.mRNA


Basic Information

Item Value
RNA id CI01000034_01675050_01677339.mRNA
length 1887
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000034_01675050_01677339
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1674793 ~ 1678699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTGGTCTTTTCTGGCTTCAGATCTTGTAGCAGCAATTAAAGTTTTGGTGACAATACCTTTTCCGATTTAGAAAAAACTGTAACACCGTGAGCCATATTTTTATTTGCTTATTTTGATTGCCGCAATTTCCAGACTCTTAGATGCTATCTGCTTTTTGTCGCATTGCGAAATTTTCGTGCATGTGTAGTTTAGTGCAGTGTGGGGAATATTGTGAGCATACTTGCCATAACGTGTCAAATGTTTTTGTCTTAAATTTTTCGTTCTGAAATGTTTTTTTACTATTAACTACAACAGAATTTCCGTCATATGTATTAAGGTATGCTAACGAGAAGTCTTTCTGTTTGAATCGAGATTCTTTCTTTCTTTCATTCTTTCTAGATATTAATCAATCAAAAAAATATTAACAATTACTCGGCTAATTCTTTTTTCCTATTTCATATTACTGTATGATATTATGGTTCTGCTTCCAACATAATCCTCAGCAAACATCCTCTTTTGAATTAGACACTATATCCAATCCTATTAAAAATAATTTGACTTGGCCACTAACCAGTTTATAGCATCGTAAACCTATAACATCACTGTTGTAACTTTGATCTCCCTTGATTTGCGACATTGTTTTGGATGGCTTAATTTTATATTAAAGCTCAATCGTGGTAAATTGCCTTAATTATATTACAACAATGTCAAACCGCGTTGGTGTTATATTCCGGCTTTAAAAACACAAATATCACATGCTCAAGAGCCTATGATCTTACACGTTCGACTCATAAGCTTTTTAGCTAGCTGAAGTAAAGCAGTGCATGTAAACAAGCACAAAAAATATGCGATTTTCCTTGCGATTGTATAGGGAAAAGATGGCGACTGCAGAGCTACTGCTGTTAAAACAGTCATGAAGAAATGCAATAAATTCCTTGTTGTTTTATGAAAATTTACAACTTTGTGATAGAACTTTATGAGTGCCTGGGTCCTGGGATTGGCCGAGGATGGTCATGTGGACGAGTAACCGTGAACATGAACTTTTTATGATTTCCCAAGTGGTTATATTGCAGCATTCTTTTGGCCGCGGCACTTAATGTAGCTTCACTGTGCTCCTTAAAGGTTCTTGCTCTTTTTTTTTATAGTATATTTTGGCCAGCACTGAAAATTCATACAGTCGGAGAGCATTGTTCAGGCTGATGTTCTCAAATGGAACAGGGAGAGAACAGCCTCCTCTCCTCTCTGCTATGCTAATGTGGCCGCCTGTGATTGGGATAAGCACTGCGATGGAGTCTTATTGAGACCTGGACACGCAGTAGGGTCTCATCTAATTTTTCATACGGGGGTCTGACTCCTGTTGACTGAAGCGGGTGAAACGGATGGAAGCTGTGGTGCCGCTGTCATTTTCACTGCTTCGCTCTAATGGCGGGACCAAGAAGAGCAACAGGACTTACCGAGCGCGAGCTACGGCGAGAGGTTTGCGCCTCTCTGTCCTGGTGCTGGGTGACGAATTATCAACAAAGGAAGTACATACTCCAAGCAATAAGTGTTTATTTGGACTGGTAGTGGGCATAGTAACCGGAAAGAGTGAGAGAGGAAAAAGTGAGAGGGAGGAGGGAATACTTGGAGATTGTATGAGTCCTGTTTAATGTCGTAAAGAGTGAATGTGTGATATGGGTTGTCTCTTGTAGTCTTTGTGTATATTTTACGGCTCTGCTGTTTTGCACCTTAAGTAAAATCATTTGTAAGCAATTCCAGCCACAAGACTGAGTTTCCATAATGTAAAAAAGTACAGTCACTCATTTTATTCGCATAGCTGTGGGCGGCATATATAACTTCAGTGGTTTATGCCATTTCAGAACATGGATAATTACAGACTGTGAATTATTGTTAGCGCATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194972 lncRNA downstream 272881 1400324 ~ 1401912 (-) True G171631
TU194918 lncRNA downstream 426440 1248143 ~ 1248353 (-) True G171582
TU194908 lncRNA downstream 476523 1197978 ~ 1198270 (-) True G171572
TU194730 lncRNA downstream 547150 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 552074 1122417 ~ 1122719 (-) True G171549
TU195064 lncRNA upstream 31979 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 61945 1740644 ~ 1741140 (-) True G171712
TU195086 lncRNA upstream 85802 1764501 ~ 1768078 (-) True G171724
TU195093 lncRNA upstream 102147 1780846 ~ 1781056 (-) True G171731
TU195113 lncRNA upstream 148897 1827596 ~ 1830627 (-) True G171751
CI01000034_01670204_01671915.mRNA mRNA downstream 2858 1669903 ~ 1671935 (-) True CI01000034_01670204_01671915
CI01000034_01666303_01667765.mRNA mRNA downstream 6893 1666064 ~ 1667900 (-) True CI01000034_01666303_01667765
CI01000034_01652735_01654473.mRNA mRNA downstream 19187 1652277 ~ 1655606 (-) True CI01000034_01652735_01654473
CI01000034_01648924_01649935.mRNA mRNA downstream 24390 1648898 ~ 1650403 (-) True CI01000034_01648924_01649935
CI01000034_01625293_01629938.mRNA mRNA downstream 43421 1624700 ~ 1631372 (-) True CI01000034_01625293_01629938
CI01000034_01680053_01683539.mRNA mRNA upstream 890 1679589 ~ 1683539 (-) True CI01000034_01680053_01683539
CI01000034_01684215_01687260.mRNA mRNA upstream 5478 1684177 ~ 1687260 (-) True CI01000034_01684215_01687260
CI01000034_01694301_01697568.mRNA mRNA upstream 15342 1694041 ~ 1698427 (-) True CI01000034_01694301_01697568
CI01000034_01703545_01705527.mRNA mRNA upstream 24193 1702892 ~ 1706043 (-) True CI01000034_01703545_01705527
CI01000034_01718736_01720031.mRNA mRNA upstream 39907 1718606 ~ 1720246 (-) True CI01000034_01718736_01720031
TU194733 other downstream 356539 1318049 ~ 1318254 (-) True G171408
TU194720 other downstream 597571 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 1090510 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1407547 229404 ~ 267246 (-) True G171229
TU195117 other upstream 185419 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 763122 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 763122 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 763220 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 831114 2509813 ~ 2510031 (-) True G171834

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1331291 True 626 lncRNA 0.46 1 NC_048577.1 34148153 ~ 34148778 (+)