RNA id: TU195581


Basic Information

Item Value
RNA id TU195581
length 1453
lncRNA type read_through
GC content 0.39
exon number 2
gene id G172151
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3391144 ~ 3451802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCATCAGTGATGACTTCTTGTATATCATTTCAGATGAAAAGTCATACACAAAACTAAAGCTGTTGATTGTACTGATGCAAAGACTGACGCTGAATTCAAATGCTCATCCTTGCAGAGTTCTTGAATCATCGGAGTCCACACCTTTACATTACTAGCTTCAGCTGTCTGGAAAACCTTTTCAAGAAGAAAAGCAAAACGGGCCATTCCATTTTATTGGAAAGTCAAGACTTGGAGACGTCAACAAGAGCCATTCTTTAACCGCTGGAACTCTTACCTTTTGACTTTGACCTGGGAGGCAGTCACCATGCCCTTTTTTACACTTCATAAACCCTCACAATGATGATGTTACTGCCATACACTGTTACAAATCCTATGGTCTGAAGTACTGAGCTTTTGCCTTGTATATGACAACATTTGCAAGGTACTTCTATCCTAAACAACTACAGTGTATTCAATGTATTTCATTAGTAAAAACCAACCAACAAACATGTAAACGTATTCACCCTTATAGTGATACCTTTATTTAGCCCCTCTAAAACTGACATTTGTTTAGTCTGAGTGTAAAAACTGAAAACGTAGAAAACTGAAATTGTGTAAACTGTGTGACTGTCTATAGTTATGTCAGTGATCCAGACTGTATATGTGTAACCACTGTAAGAGGCAGCAGAAATGCAACATCGCTAATGCTTTTGATCTTAGCGCAGAAGGAACTCCGCTTTGAGATAAGAGAGTGGGTTTTGGGAAGTGAAACTAATCATGTGTCTGTTGGTCAAAACTCTTCTCCACAACGTCAAAATCTCTCAGTTTCAGCAAAGATGCTTCAGATAAATATATTGGTTAGATTTCCAGCTTAGCTCATCTACCATGAAGACTAGGGCCAAAATCGAACATTTCCCTGACCACTGAGAACTGCAACCTGGTATAAAGCTAAAAACGAAGCAACAACTTAAATAAATGAGCATCGCATTGTGGACTGAGAGACATGACAATGGGGGTGAGGGTTTGATGATTGATTGAGAGTGAAGGAAATGAAATGTCTCCTGATCTCAATGTACCAGAGAAATACAACACTCATGACAGAGACACGGGAGGTTTTAGCTACTCTCAGCTACGCGTCCCTAAAAGCACCAAGTAATCTGAGCTAATCACGATCCAATTTAATTAAGCACTGTTTGAGATTTCTTTGCTAGCAGCCATTAATTAAGATTCAAAAATCTTTTTTTTTCTTCTTGTCTTCGTCCTGTGTATCTTGTTGTTCAATGTTATGAACAACACTGGCGTGGCCTAACAAGGGATGTGGGTAGCAGAGAAAGGCCTCTGCCCTTTTCAACAAAAGCTTCTTTGTGTTTATAATAATCTGTGAGGTCTGAAGTCCATTTTTGTAATTCTTTCTTGTTTATTTTTCCACCATGCATTAGCATAGCATGTGTTTCATGTGTTTAACAGTTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195569 lncRNA downstream 2988 3388487 ~ 3388774 (-) True G172149
TU195568 lncRNA downstream 3524 3388002 ~ 3388238 (-) True G172148
TU195567 lncRNA downstream 3893 3387632 ~ 3387869 (-) True G172147
TU195434 lncRNA downstream 61268 3328810 ~ 3330494 (-) True G172021
TU195447 lncRNA downstream 66551 3324484 ~ 3325211 (-) True G172030
TU195612 lncRNA upstream 34912 3486714 ~ 3486924 (-) True G172170
TU195667 lncRNA upstream 119411 3571213 ~ 3571431 (-) True G172222
TU195670 lncRNA upstream 122113 3573915 ~ 3574185 (-) True G172225
TU195671 lncRNA upstream 122555 3574357 ~ 3574705 (-) True G172226
TU195672 lncRNA upstream 123409 3575211 ~ 3575418 (-) True G172227
CI01000034_03285980_03289258.mRNA mRNA downstream 102504 3285790 ~ 3289258 (-) True CI01000034_03285980_03289258
CI01000034_03255619_03266388.mRNA mRNA downstream 124072 3255268 ~ 3267690 (-) True CI01000034_03255619_03266388
CI01000034_03250695_03253982.mRNA mRNA downstream 137560 3250402 ~ 3254202 (-) True CI01000034_03250695_03253982
CI01000034_03247806_03248810.mRNA mRNA downstream 142815 3247794 ~ 3248947 (-) True CI01000034_03247806_03248810
CI01000034_02875948_02953386.mRNA mRNA downstream 437242 2875658 ~ 2954520 (-) True CI01000034_02875948_02953386
CI01000034_03577874_03611044.mRNA mRNA upstream 125652 3577454 ~ 3611099 (-) True CI01000034_03577874_03611044
CI01000034_03659420_03661699.mRNA mRNA upstream 207488 3659290 ~ 3661699 (-) True CI01000034_03659420_03661699
CI01000034_03803160_03827982.mRNA mRNA upstream 351030 3802832 ~ 3827982 (-) True CI01000034_03803160_03827982
CI01000034_03911480_03913846.mRNA mRNA upstream 459273 3911075 ~ 3913846 (-) True CI01000034_03911480_03913846
CI01000034_03915853_03921269.mRNA mRNA upstream 463949 3915751 ~ 3921269 (-) True CI01000034_03915853_03921269
TU195428 other downstream 155147 3234963 ~ 3236615 (-) False G172016
TU195214 other downstream 880241 2509813 ~ 2510031 (-) True G171834
TU195212 other downstream 880241 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512
TU195221 other downstream 945469 2441821 ~ 2446293 (-) False G171835
TU195735 other upstream 714697 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195733 other upstream 764410 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU196079 other upstream 1541158 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 2337230 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 2337454 5789256 ~ 5789738 (-) True G172800

Expression Profile