RNA id: TU198758


Basic Information

Item Value
RNA id TU198758
length 198
RNA type TUCP
GC content 0.44
exon number 1
gene id CI01000037_01674415_01677266
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 1674093 ~ 1677407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAGACCAAACGCACCATCCAGTTTGTAGACTGGTGCCCTACTGGATTCAAAGTAGGTATCAACTATCAGCCTCCAACGGTGGTTCCTGGTGGAGATCTGGCCAAAGTACAGAGAGCCGTTTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGTCTAGACCACAAGTTTGACCTGATGTACGCCAAGAGAGCCTTTGTGCACTGGTATGTGGGAGAGGGAATGGAGGAAGGAGAGTTCTCAGAGGCCAGAGAAGACATGGCAGCTCTGGAGAAGGATTATGAAGAAGTCGGCACTGACAGCATGGGAGAGGAGGATGAAGAGGGAGAAGAATATTAAAGTCGGAATCAACGAAGTTCTACTTAGCTGCCCTGCAAAATAAAATCTGATCATTAAGATTTTTGCAAAAATAATTACTTGAAATTCCATTTGCATTACAGTTGGTTTCACATGAATAAAATTTGAAAAATAAAAGAAAGA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198743 lncRNA upstream 58189 1613876 ~ 1614151 (+) False G174949
TU198742 lncRNA upstream 58189 1613890 ~ 1614151 (+) True G174949
TU198696 lncRNA upstream 101861 1569917 ~ 1570479 (+) True G174916
TU198678 lncRNA upstream 213688 1396347 ~ 1458652 (+) True G174900
TU198603 lncRNA upstream 387357 1241797 ~ 1284983 (+) True G174828
TU198803 lncRNA downstream 74407 1751814 ~ 1755182 (+) True G175003
TU198804 lncRNA downstream 85387 1762794 ~ 1780869 (+) True G175004
TU199518 lncRNA downstream 354139 2031546 ~ 2060079 (+) True G175641
TU199551 lncRNA downstream 386765 2064172 ~ 2064536 (+) True G175670
TU199555 lncRNA downstream 396021 2073428 ~ 2073640 (+) True G175674
CI01000037_01098540_01104541.mRNA mRNA upstream 567154 1098072 ~ 1105186 (+) True CI01000037_01098540_01104541
CI01000037_01075201_01076456.mRNA mRNA upstream 595851 1073974 ~ 1076489 (+) True CI01000037_01075201_01076456
CI01000037_00987906_00988350.mRNA mRNA upstream 683968 987906 ~ 988372 (+) False CI01000037_00987906_00988350
CI01000037_00874555_00887437.mRNA mRNA upstream 784323 874487 ~ 888017 (+) True CI01000037_00874555_00887437
CI01000037_00808744_00809273.mRNA mRNA upstream 862467 808744 ~ 809873 (+) True CI01000037_00808744_00809273
CI01000037_01685225_01686624.mRNA mRNA downstream 7818 1685225 ~ 1686738 (+) True CI01000037_01685225_01686624
CI01000037_01690717_01697406.mRNA mRNA downstream 13310 1690717 ~ 1697794 (+) True CI01000037_01690717_01697406
CI01000037_01739245_01747048.mRNA mRNA downstream 61741 1739148 ~ 1747380 (+) True CI01000037_01739245_01747048
CI01000037_01788114_01805399.mRNA mRNA downstream 110707 1788114 ~ 1805405 (+) True CI01000037_01788114_01805399
CI01000037_01807429_01814912.mRNA mRNA downstream 130022 1807429 ~ 1815500 (+) True CI01000037_01807429_01814912
TU198741 other upstream 58066 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 58066 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 682581 989270 ~ 989759 (+) True G174689
TU198182 other upstream 1441944 228982 ~ 229587 (+) True G174501
TU199493 other downstream 288335 1970185 ~ 1970391 (+) True G175626
TU200317 other downstream 1162353 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 1299455 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 2535876 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile