RNA id: TU200774


Basic Information

Item Value
RNA id TU200774
length 553
RNA type TUCP
GC content 0.43
exon number 4
gene id CI01000037_04213179_04218057
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 4212907 ~ 4218305 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCTTTACACTGAATCACTCTCTTCATCCCTCTCTTGTTTTACTACATCTGTCCTCTCACATCTTATTCTCTCTGATTGGGGTGGAAACTCTGGTTTCAGACTACACTGGCAATTTCGGCAGTCTGCAATTTGTGGTTGTAACTTCAGTTTTTATACTGCGGCAGACAAACCACATTGAGCTTGTTGGAACTATGGGAAATTTAAGCTGCAAGCGAAGGAAGAAGAAACCTGAAAGCGCTGAAGATAATGACCATCAGAGAGAAACAACAGCAGGCACACGGACAGAAGATGTCCTCTATGCTTCTATTGACCACACTACCATCAATCCAGAAAGGCATATTCAAGATCTGGAGGACAACGATTGTGATTATGCCGTTGTAAAGCTCCCTCAAAACACAACAGACATAAGCAAGCACAAAAGCAGCGAGGACTGTTCAGATGATTATGTGCTCATGGGCTGAGCATTGAAATGGCTGAAATCAGCACATTCAACCGGAATGGACACCTGAGATACACAAACACAACTTTAAACGCTTGATGACTTTGTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200784 lncRNA upstream 23895 4180473 ~ 4189388 (+) True G176773
TU200700 lncRNA upstream 101833 4071869 ~ 4111450 (+) True G176701
TU200729 lncRNA upstream 112824 4099803 ~ 4100459 (+) True G176723
TU200698 lncRNA upstream 142427 4070632 ~ 4070856 (+) True G176699
TU200696 lncRNA upstream 144289 4068782 ~ 4068994 (+) True G176697
TU200797 lncRNA downstream 36941 4255088 ~ 4255537 (+) True G176786
TU200780 lncRNA downstream 44844 4262991 ~ 4266261 (+) True CI01000037_04240865_04265240
TU200779 lncRNA downstream 62467 4280614 ~ 4281394 (+) True G176768
TU200771 lncRNA downstream 86952 4305099 ~ 4306413 (+) False G176760
TU200770 lncRNA downstream 87537 4305684 ~ 4306561 (+) True G176760
CI01000037_04175833_04178651.mRNA mRNA upstream 34632 4175833 ~ 4178651 (+) True CI01000037_04175833_04178651
CI01000037_04168194_04170478.mRNA mRNA upstream 42146 4168194 ~ 4171137 (+) True CI01000037_04168194_04170478
CI01000037_04080145_04081691.mRNA mRNA upstream 130477 4078481 ~ 4082806 (+) True CI01000037_04080145_04081691
CI01000037_04061560_04065802.mRNA mRNA upstream 147242 4061560 ~ 4066041 (+) False CI01000037_04061560_04065802
CI01000037_04050140_04050646.mRNA mRNA upstream 162400 4049165 ~ 4050883 (+) False CI01000037_04050140_04050646
CI01000037_04240865_04265240.mRNA mRNA downstream 22476 4240623 ~ 4265407 (+) False CI01000037_04240865_04265240
CI01000037_04295697_04296550.mRNA mRNA downstream 77550 4295697 ~ 4297038 (+) True CI01000037_04295697_04296550
CI01000037_04505291_04507162.mRNA mRNA downstream 286563 4504710 ~ 4507166 (+) False CI01000037_04505291_04507162
CI01000037_04566454_04567634.mRNA mRNA downstream 348307 4566454 ~ 4568152 (+) True CI01000037_04566454_04567634
CI01000037_04582339_04583876.mRNA mRNA downstream 364192 4582339 ~ 4583876 (+) True CI01000037_04582339_04583876
TU200353 other upstream 1125315 2976862 ~ 3087968 (+) True G176377
TU200317 other upstream 1373230 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 2242892 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 2535876 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 2599009 1613876 ~ 1614274 (+) False G174949

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072788 True 1909 processed_transcript 0.37 4 NC_007120.7 9371502 ~ 9392231 (+)