RNA id: CI01000037_04061560_04065802.mRNA


Basic Information

Item Value
RNA id CI01000037_04061560_04065802.mRNA
length 560
RNA type mRNA
GC content 0.36
exon number 3
gene id CI01000037_04061560_04065802
representative False

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 4061560 ~ 4066041 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTTTCAGGATTTCTTGAAAATAATCCTGAAAAATTACATAACCTGTCTGTCATGAGAGCTAACTATGATAAATTAACATCTGATAAAGTGGCTAAAAGCCTAATGTTGACTAAACAAACATATTATGACCAGGGGGAAAAAGCAGCGGCGCTGGTAGACCGGCTGGACCATTGTGAGACAGGCAGGAAGAGTCGTTGTGAAGACAAAAGACTACTACGTGAAATTGCGGCGCTGGCAGAAGGGCAGAACCATCGTGAGACAGGCGGAAAGAGTCGTCGCAATAAAGAAGGCCCTTTTCTTTATAGCATGTGGTTTTAAGATTTAAGATGATATGTATTCGCTGGTTACTGTTGTATACTGCTACTAATTAACTACTTTAAGTACTTTAACTCTTCAAACTTTTATTTTTATATTTCCATCATTTATTTTTCACTGGCACAATGTGTTAATGTGATTTTAGTGGTATGACTTTAATTGTATTTTGTTAATTGATGAAATTAATATGCTGGTAAATCTGTATTGAAGTTCAGCTATGAAACGTAAAAGATGAAACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200688 lncRNA upstream 8716 4052464 ~ 4052844 (+) True G176691
TU200687 lncRNA upstream 9368 4051977 ~ 4052192 (+) True G176690
TU200686 lncRNA upstream 10119 4051205 ~ 4051441 (+) True G176689
TU200685 lncRNA upstream 10718 4050579 ~ 4050842 (+) True CI01000037_04050140_04050646
TU200684 lncRNA upstream 11477 4049871 ~ 4050083 (+) False CI01000037_04050140_04050646
TU200696 lncRNA downstream 2741 4068782 ~ 4068994 (+) True G176697
TU200698 lncRNA downstream 4591 4070632 ~ 4070856 (+) True G176699
TU200700 lncRNA downstream 5828 4071869 ~ 4111450 (+) True G176701
TU200729 lncRNA downstream 33762 4099803 ~ 4100459 (+) True G176723
TU200784 lncRNA downstream 114432 4180473 ~ 4189388 (+) True G176773
CI01000037_04050140_04050646.mRNA mRNA upstream 10677 4049165 ~ 4050883 (+) False CI01000037_04050140_04050646
CI01000037_03946645_03954021.mRNA mRNA upstream 107246 3945995 ~ 3954314 (+) True CI01000037_03946645_03954021
CI01000037_03901647_03902747.mRNA mRNA upstream 158813 3899399 ~ 3902747 (+) True CI01000037_03901647_03902747
CI01000037_03875808_03891566.mRNA mRNA upstream 169173 3875488 ~ 3892387 (+) True CI01000037_03875808_03891566
CI01000037_03855991_03860283.mRNA mRNA upstream 200259 3855991 ~ 3861301 (+) True CI01000037_03855991_03860283
CI01000037_04080145_04081691.mRNA mRNA downstream 12440 4078481 ~ 4082806 (+) True CI01000037_04080145_04081691
CI01000037_04168194_04170478.mRNA mRNA downstream 102153 4168194 ~ 4171137 (+) True CI01000037_04168194_04170478
CI01000037_04175833_04178651.mRNA mRNA downstream 109792 4175833 ~ 4178651 (+) True CI01000037_04175833_04178651
CI01000037_04213179_04218057.mRNA mRNA downstream 146866 4212907 ~ 4218305 (+) False CI01000037_04213179_04218057
CI01000037_04240865_04265240.mRNA mRNA downstream 174582 4240623 ~ 4265407 (+) False CI01000037_04240865_04265240
TU200353 other upstream 973592 2976862 ~ 3087968 (+) True G176377
TU200317 other upstream 1221507 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 2091169 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 2384153 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198740 other upstream 2447286 1613890 ~ 1614274 (+) False G174949
TU200774 other downstream 147242 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile