CI01000037_04050140_04050646


Basic Information

Item Value
gene id CI01000037_04050140_04050646
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 4049165 ~ 4050883 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000037_04050140_04050646.mRNA
TGATAAATACCCTAGTGATTACAACACTCGCTAGTGCAGTCACGTCAGAACCTCTAGCCATCAGCGCAGCCATGCCTGAGCTCCCAGCAGTCAGGATTACCAACCCAAAGCCTCCAGTTAAGGATGAGACCTTTCAGTCTTCAGCCTTCACGGACACCACCCTTGTGTTCCCGGGTGTCGTCGACGCTGCGATTTGAGGATGTCAAGGCATATCCACGCTGGGGCTTCATGTCAAATTTGGCAGATCCACCTCTGAGAACGATCAGAACAGCCGGCATGTGACAGCTGCACCAGCTCCAGAGCCTGCTCCAGTCCATGAATCCTTTCCTGAGTTTATTCCAGTCCATGAAGTCATTGCAGAGCCCGCTTCAGTCCTTGAGTGTTTTGCTGAGCCCGCTCAAGTCCATGAATCCTCTCCTGAATCTGCTTCAGTATATGAGTCTGCTCCTGAGCCCAAGTCTGATCCTGAGCCCAAGTCTGTTTCTGAGCCTGCTCAAGTCTATGAATCTGTTCCTGAGGCCGTCTCTGAGCCTGTTCGAGTCTATAAGTCTGTTCCTGAGCCTGAGTCCGTTCCTGAACCCAAGTCTGTTTCTGAGTCTGTTCAAATCTATAAGTCTGTTCCTGTACCAGAGTCTGTTCTTGAGCCTGAGGCTGTCTCTGGGCCTGTTCGAATCTACAAGTCTGTTCCTGTCAATGAGTCTGTGCACTCTAAACCTGTGCCTGTCCACAAACCTGACACAAAGCCTACTCCTGAGTCTATATGCCTTGTCAGTTTTGAGAAGTCTACCTAGCCCTGCTTTACTGCTGATCCGTCTTGGGAGTTTCTGGTTCTATCTGCCTGTCTCTGGTGGTCGTCGGCTTCACCCTGGAAACCTTCTGTTCAGCGTGCACCACCCTGGAGACCTTCTGTTTAGCGTGCTCTGCCCTAGAGACCTTCTGTCCAGCATGCACTGCCCTGGAGACCTTCTGTCCAGCATGCACTGCCCTGGAGACCTTCTGTCCAGCATGCACTGCCCTGGAGACCTTCTGTTCAGCATGCTCCGCCCTGGAGACCTCAGAAGGTCCAACGTGCTCCGCCCTGGAGACCTTCTGTCCAGCCCGCTCCGCCCTGGAGACCTTTTTTCCAGCATGCACCACCCTGGAGACCTTCTGTCCAATGTGCTCCGCCTTGGCCATCTTCGTCTTTACAATCTCCCCACATCCAGCTTACTGGTCTCTGGCTTTCAGCTTTGCTTCTCCTCCTGCGTCTGTTTCTGCTCCATGGTCCTGGCCCACCTTCCCGCCCCCAGATCTGCCTCCACTCCACCTCCCACCAGTTCTTCTGTGTTGGAGCATCTGGAAGCCGCTCCTTCAAGGAGGGGCTATATTACATCTGTCAGCTGCGGATGCAATTGTTTACCAGCAGATGGCAGCCTTCCTTATCACACTCTTATCACACTTATTCCTGGACTCCATTTCCCAGAACTCTCTGCTCATTATTAGTTTATCAGTTTCAGCTGTGTCTTGTTTGAACCATGTAATTAACTCTGTCTTTTTATACTCCTCTAGGCTTTGTGTCAGTATGAAGTCTTGTTTTTGTGTTTTGTGTTACTGACAGTTTTCTGAGTAGTCTTGTTGTTCCTGGTTCTGATATCTGCCTTGTCTTGGATTTGGATTGATAACTTGTGCTTTGACCCTCTGCCTGGTTTTTGGACTATGACTGTGGATTGTATTTTCTCA
>TU200684
CTCTAAACCTGTGCCTGTCCACAAACCTGACACAAAGCCTACTCCTGAGTCTATATGCCTTGTCAGTTTTGAGAAGTCTACCTAGCCCTGCTTTACTGCTGATCCGTCTTGGGAGTTTCTGGTTCTATCTGCCTGTCTCTGGTGGTCGTCGGCTTCACCCTGGAAACCTTCTGTTCAGCGTGCACCACCCTGGAGACCTTCTGTTTAGCGTGC
>TU200685
TTCCTTATCACACTCTTATCACACTTATTCCTGGACTCCATTTCCCAGAACTCTCTGCTCATTATTAGTTTATCAGTTTCAGCTGTGTCTTGTTTGAACCATGTAATTAACTCTGTCTTTTTATACTCCTCTAGGCTTTGTGTCAGTATGAAGTCTTGTTTTTGTGTTTTGTGTTACTGACAGTTTTCTGAGTAGTCTTGTTGTTCCTGGTTCTGATATCTGCCTTGTCTTGGATTTGGATTGATAACTTGTGCTTTGACCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000037_04050140_04050646.mRNA False 1719 mRNA 0.51 1 4049165 4050883
TU200684 False 213 lncRNA 0.52 1 4049871 4050083
TU200685 True 264 lncRNA 0.38 1 4050579 4050842

Neighbor

gene id symbol gene type direction distance location
CI01000037_03946645_03954021 SIK1 coding upstream 94851 3945995 ~ 3954314 (+)
CI01000037_03901647_03902747 NA coding upstream 146418 3899399 ~ 3902747 (+)
CI01000037_03875808_03891566 NA coding upstream 156778 3875488 ~ 3892387 (+)
CI01000037_03855991_03860283 UBE2A.L, UBE2A, UBE2B, UBE2AL, BRAFLDRAFT_128294 coding upstream 187864 3855991 ~ 3861301 (+)
CI01000037_03824405_03854894 ANKRD10B coding upstream 193971 3824208 ~ 3855194 (+)
CI01000037_04061560_04065802 NA coding downstream 10677 4061560 ~ 4066041 (+)
CI01000037_04080145_04081691 NA coding downstream 27598 4078481 ~ 4082806 (+)
CI01000037_04168194_04170478 NA coding downstream 117311 4168194 ~ 4171137 (+)
CI01000037_04175833_04178651 NA coding downstream 124950 4175833 ~ 4178651 (+)
CI01000037_04213179_04218057 NA coding downstream 162024 4212907 ~ 4218305 (+)
G176680 NA non-coding upstream 13569 4035168 ~ 4035596 (+)
G176679 NA non-coding upstream 15678 4033255 ~ 4033487 (+)
G176673 NA non-coding upstream 28328 4020447 ~ 4020837 (+)
G176672 NA non-coding upstream 29234 4019447 ~ 4019931 (+)
G176519 NA non-coding upstream 39121 3930981 ~ 4010044 (+)
G176689 NA non-coding downstream 322 4051205 ~ 4051441 (+)
G176690 NA non-coding downstream 1094 4051977 ~ 4052192 (+)
G176691 NA non-coding downstream 1581 4052464 ~ 4052844 (+)
G176697 NA non-coding downstream 17899 4068782 ~ 4068994 (+)
G176377 NA other upstream 961197 2976862 ~ 3087968 (+)
G176346 NA other upstream 1209112 2839760 ~ 2840053 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 2078774 1965603 ~ 1966435 (+)
G174949 NA other upstream 2434891 1613876 ~ 1614274 (+)

Expression


Co-expression Network