RNA id: CI01000037_04050140_04050646.mRNA



Basic Information


Item Value
RNA id CI01000037_04050140_04050646.mRNA
length 1719
RNA type mRNA
GC content 0.51
exon number 1
gene id CI01000037_04050140_04050646
representative False

Chromosome Information


Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 4049165 ~ 4050883 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGATAAATACCCTAGTGATTACAACACTCGCTAGTGCAGTCACGTCAGAACCTCTAGCCATCAGCGCAGCCATGCCTGAGCTCCCAGCAGTCAGGATTACCAACCCAAAGCCTCCAGTTAAGGATGAGACCTTTCAGTCTTCAGCCTTCACGGACACCACCCTTGTGTTCCCGGGTGTCGTCGACGCTGCGATTTGAGGATGTCAAGGCATATCCACGCTGGGGCTTCATGTCAAATTTGGCAGATCCACCTCTGAGAACGATCAGAACAGCCGGCATGTGACAGCTGCACCAGCTCCAGAGCCTGCTCCAGTCCATGAATCCTTTCCTGAGTTTATTCCAGTCCATGAAGTCATTGCAGAGCCCGCTTCAGTCCTTGAGTGTTTTGCTGAGCCCGCTCAAGTCCATGAATCCTCTCCTGAATCTGCTTCAGTATATGAGTCTGCTCCTGAGCCCAAGTCTGATCCTGAGCCCAAGTCTGTTTCTGAGCCTGCTCAAGTCTATGAATCTGTTCCTGAGGCCGTCTCTGAGCCTGTTCGAGTCTATAAGTCTGTTCCTGAGCCTGAGTCCGTTCCTGAACCCAAGTCTGTTTCTGAGTCTGTTCAAATCTATAAGTCTGTTCCTGTACCAGAGTCTGTTCTTGAGCCTGAGGCTGTCTCTGGGCCTGTTCGAATCTACAAGTCTGTTCCTGTCAATGAGTCTGTGCACTCTAAACCTGTGCCTGTCCACAAACCTGACACAAAGCCTACTCCTGAGTCTATATGCCTTGTCAGTTTTGAGAAGTCTACCTAGCCCTGCTTTACTGCTGATCCGTCTTGGGAGTTTCTGGTTCTATCTGCCTGTCTCTGGTGGTCGTCGGCTTCACCCTGGAAACCTTCTGTTCAGCGTGCACCACCCTGGAGACCTTCTGTTTAGCGTGCTCTGCCCTAGAGACCTTCTGTCCAGCATGCACTGCCCTGGAGACCTTCTGTCCAGCATGCACTGCCCTGGAGACCTTCTGTCCAGCATGCACTGCCCTGGAGACCTTCTGTTCAGCATGCTCCGCCCTGGAGACCTCAGAAGGTCCAACGTGCTCCGCCCTGGAGACCTTCTGTCCAGCCCGCTCCGCCCTGGAGACCTTTTTTCCAGCATGCACCACCCTGGAGACCTTCTGTCCAATGTGCTCCGCCTTGGCCATCTTCGTCTTTACAATCTCCCCACATCCAGCTTACTGGTCTCTGGCTTTCAGCTTTGCTTCTCCTCCTGCGTCTGTTTCTGCTCCATGGTCCTGGCCCACCTTCCCGCCCCCAGATCTGCCTCCACTCCACCTCCCACCAGTTCTTCTGTGTTGGAGCATCTGGAAGCCGCTCCTTCAAGGAGGGGCTATATTACATCTGTCAGCTGCGGATGCAATTGTTTACCAGCAGATGGCAGCCTTCCTTATCACACTCTTATCACACTTATTCCTGGACTCCATTTCCCAGAACTCTCTGCTCATTATTAGTTTATCAGTTTCAGCTGTGTCTTGTTTGAACCATGTAATTAACTCTGTCTTTTTATACTCCTCTAGGCTTTGTGTCAGTATGAAGTCTTGTTTTTGTGTTTTGTGTTACTGACAGTTTTCTGAGTAGTCTTGTTGTTCCTGGTTCTGATATCTGCCTTGTCTTGGATTTGGATTGATAACTTGTGCTTTGACCCTCTGCCTGGTTTTTGGACTATGACTGTGGATTGTATTTTCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200677 lncRNA upstream 13569 4035168 ~ 4035596 (+) True G176680
TU200676 lncRNA upstream 15678 4033255 ~ 4033487 (+) True G176679
TU200670 lncRNA upstream 28328 4020447 ~ 4020837 (+) True G176673
TU200668 lncRNA upstream 29234 4019447 ~ 4019931 (+) True G176672
TU200666 lncRNA upstream 29491 4019447 ~ 4019674 (+) False G176672
TU200686 lncRNA downstream 322 4051205 ~ 4051441 (+) True G176689
TU200687 lncRNA downstream 1094 4051977 ~ 4052192 (+) True G176690
TU200688 lncRNA downstream 1581 4052464 ~ 4052844 (+) True G176691
TU200689 lncRNA downstream 2784 4053667 ~ 4065573 (+) True G176692
TU200696 lncRNA downstream 17899 4068782 ~ 4068994 (+) True G176697
CI01000037_03946645_03954021.mRNA mRNA upstream 94851 3945995 ~ 3954314 (+) True CI01000037_03946645_03954021
CI01000037_03901647_03902747.mRNA mRNA upstream 146418 3899399 ~ 3902747 (+) True CI01000037_03901647_03902747
CI01000037_03875808_03891566.mRNA mRNA upstream 156778 3875488 ~ 3892387 (+) True CI01000037_03875808_03891566
CI01000037_03855991_03860283.mRNA mRNA upstream 187864 3855991 ~ 3861301 (+) True CI01000037_03855991_03860283
CI01000037_03824405_03854894.mRNA mRNA upstream 193971 3824208 ~ 3855194 (+) True CI01000037_03824405_03854894
CI01000037_04061560_04065802.mRNA mRNA downstream 10677 4061560 ~ 4066041 (+) False CI01000037_04061560_04065802
CI01000037_04080145_04081691.mRNA mRNA downstream 27598 4078481 ~ 4082806 (+) True CI01000037_04080145_04081691
CI01000037_04168194_04170478.mRNA mRNA downstream 117311 4168194 ~ 4171137 (+) True CI01000037_04168194_04170478
CI01000037_04175833_04178651.mRNA mRNA downstream 124950 4175833 ~ 4178651 (+) True CI01000037_04175833_04178651
CI01000037_04213179_04218057.mRNA mRNA downstream 162024 4212907 ~ 4218305 (+) False CI01000037_04213179_04218057
TU200353 other upstream 961197 2976862 ~ 3087968 (+) True G176377
TU200317 other upstream 1209112 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 2078774 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 2371758 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198740 other upstream 2434891 1613890 ~ 1614274 (+) False G174949
TU200774 other downstream 162400 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile