RNA id: TU200687


Basic Information

Item Value
RNA id TU200687
length 216
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G176690
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 4051977 ~ 4052192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAGATTTAGTTGACTAAAATCTAAAGGGTTTAGTTACATTTGTAATGCAAAATACACTGATATACATATATTCTCCTAATTGTGTCACAGAGACGAACTCCGTGATTCCCTCCTCTGGCCATCAGAGGAAGCCTTCGCCGGAATACTGACACACACATTCTCACACACGCACTACATTTCCCACAAGCCCCGTACCTTGGCGCTGATTGACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200686 lncRNA upstream 536 4051205 ~ 4051441 (+) True G176689
TU200685 lncRNA upstream 1135 4050579 ~ 4050842 (+) True CI01000037_04050140_04050646
TU200684 lncRNA upstream 1894 4049871 ~ 4050083 (+) False CI01000037_04050140_04050646
TU200677 lncRNA upstream 16381 4035168 ~ 4035596 (+) True G176680
TU200676 lncRNA upstream 18490 4033255 ~ 4033487 (+) True G176679
TU200688 lncRNA downstream 272 4052464 ~ 4052844 (+) True G176691
TU200689 lncRNA downstream 1475 4053667 ~ 4065573 (+) True G176692
TU200696 lncRNA downstream 16590 4068782 ~ 4068994 (+) True G176697
TU200698 lncRNA downstream 18440 4070632 ~ 4070856 (+) True G176699
TU200700 lncRNA downstream 19677 4071869 ~ 4111450 (+) True G176701
CI01000037_04050140_04050646.mRNA mRNA upstream 1094 4049165 ~ 4050883 (+) False CI01000037_04050140_04050646
CI01000037_03946645_03954021.mRNA mRNA upstream 97663 3945995 ~ 3954314 (+) True CI01000037_03946645_03954021
CI01000037_03901647_03902747.mRNA mRNA upstream 149230 3899399 ~ 3902747 (+) True CI01000037_03901647_03902747
CI01000037_03875808_03891566.mRNA mRNA upstream 159590 3875488 ~ 3892387 (+) True CI01000037_03875808_03891566
CI01000037_03855991_03860283.mRNA mRNA upstream 190676 3855991 ~ 3861301 (+) True CI01000037_03855991_03860283
CI01000037_04061560_04065802.mRNA mRNA downstream 9368 4061560 ~ 4066041 (+) False CI01000037_04061560_04065802
CI01000037_04080145_04081691.mRNA mRNA downstream 26289 4078481 ~ 4082806 (+) True CI01000037_04080145_04081691
CI01000037_04168194_04170478.mRNA mRNA downstream 116002 4168194 ~ 4171137 (+) True CI01000037_04168194_04170478
CI01000037_04175833_04178651.mRNA mRNA downstream 123641 4175833 ~ 4178651 (+) True CI01000037_04175833_04178651
CI01000037_04213179_04218057.mRNA mRNA downstream 160715 4212907 ~ 4218305 (+) False CI01000037_04213179_04218057
TU200353 other upstream 964009 2976862 ~ 3087968 (+) True G176377
TU200317 other upstream 1211924 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 2081586 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 2374570 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198740 other upstream 2437703 1613890 ~ 1614274 (+) False G174949
TU200774 other downstream 161091 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile