Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU200689 |
| length | 268 |
| lncRNA type | sense_over |
| GC content | 0.43 |
| exon number | 3 |
| gene id | G176692 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000037 |
| NCBI id | null |
| chromosome length | 4612320 |
| location | 4053667 ~ 4065573 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU200688 | lncRNA | upstream | 823 | 4052464 ~ 4052844 (+) | True | G176691 |
| TU200687 | lncRNA | upstream | 1475 | 4051977 ~ 4052192 (+) | True | G176690 |
| TU200686 | lncRNA | upstream | 2226 | 4051205 ~ 4051441 (+) | True | G176689 |
| TU200685 | lncRNA | upstream | 2825 | 4050579 ~ 4050842 (+) | True | CI01000037_04050140_04050646 |
| TU200684 | lncRNA | upstream | 3584 | 4049871 ~ 4050083 (+) | False | CI01000037_04050140_04050646 |
| TU200696 | lncRNA | downstream | 2868 | 4068782 ~ 4068994 (+) | True | G176697 |
| TU200698 | lncRNA | downstream | 4718 | 4070632 ~ 4070856 (+) | True | G176699 |
| TU200700 | lncRNA | downstream | 5955 | 4071869 ~ 4111450 (+) | True | G176701 |
| TU200729 | lncRNA | downstream | 33889 | 4099803 ~ 4100459 (+) | True | G176723 |
| TU200784 | lncRNA | downstream | 114559 | 4180473 ~ 4189388 (+) | True | G176773 |
| CI01000037_04050140_04050646.mRNA | mRNA | upstream | 2784 | 4049165 ~ 4050883 (+) | False | CI01000037_04050140_04050646 |
| CI01000037_03946645_03954021.mRNA | mRNA | upstream | 99353 | 3945995 ~ 3954314 (+) | True | CI01000037_03946645_03954021 |
| CI01000037_03901647_03902747.mRNA | mRNA | upstream | 150920 | 3899399 ~ 3902747 (+) | True | CI01000037_03901647_03902747 |
| CI01000037_03875808_03891566.mRNA | mRNA | upstream | 161280 | 3875488 ~ 3892387 (+) | True | CI01000037_03875808_03891566 |
| CI01000037_03855991_03860283.mRNA | mRNA | upstream | 192366 | 3855991 ~ 3861301 (+) | True | CI01000037_03855991_03860283 |
| CI01000037_04080145_04081691.mRNA | mRNA | downstream | 12567 | 4078481 ~ 4082806 (+) | True | CI01000037_04080145_04081691 |
| CI01000037_04168194_04170478.mRNA | mRNA | downstream | 102280 | 4168194 ~ 4171137 (+) | True | CI01000037_04168194_04170478 |
| CI01000037_04175833_04178651.mRNA | mRNA | downstream | 109919 | 4175833 ~ 4178651 (+) | True | CI01000037_04175833_04178651 |
| CI01000037_04213179_04218057.mRNA | mRNA | downstream | 146993 | 4212907 ~ 4218305 (+) | False | CI01000037_04213179_04218057 |
| CI01000037_04240865_04265240.mRNA | mRNA | downstream | 174709 | 4240623 ~ 4265407 (+) | False | CI01000037_04240865_04265240 |
| TU200353 | other | upstream | 965699 | 2976862 ~ 3087968 (+) | True | G176377 |
| TU200317 | other | upstream | 1213614 | 2839760 ~ 2840053 (+) | True | G176346 |
| TU199493 | other | upstream | 2083276 | 1970185 ~ 1970391 (+) | True | G175626 |
| TU198758 | other | upstream | 2376260 | 1677210 ~ 1677407 (+) | True | CI01000037_01674415_01677266 |
| TU198740 | other | upstream | 2439393 | 1613890 ~ 1614274 (+) | False | G174949 |
| TU200774 | other | downstream | 147369 | 4213283 ~ 4218147 (+) | True | CI01000037_04213179_04218057 |
