RNA id: TU200780


Basic Information

Item Value
RNA id TU200780
length 3271
lncRNA type sense_over
GC content 0.42
exon number 1
gene id CI01000037_04240865_04265240
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 4240623 ~ 4266261 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAAAAATGAAATTTCTGTCATTAATTACTCACCCATTCCAAACTCGTAAGACCTGTTCGTCTTCGGAACACAAATTAAATTTTTTTTTTTTGTGTGAAATCCGAGGGTTTCTGAACCACACATAGGCAGCAACATCATTGCACCTTTTGTGGTCCAGAAAGGTAGTAAAGACTAGGGATGTCCAGATCCGATCACGTGATCGGAAATCGGGCCCGATCACGTGGTTTCAGACTCGATCGGAATCGGACGTTACCTCCCGATCAGGACTCGGATATGCATATATATTCTCATTATATTTAACACATCTATAGTTATGCGGTGGCACAGAGTTACGCCTGTTTCACACTGCAAGCGTGAGCGTAACTACACCGTCACTGCAGCTGCAGAGACGCGTGAGTATTCACACTGGAAGCGTTTGTACAGCGTCACAGCAGCGGCTCGAAGCTACATATGTGAGCATTTCTTTACAAAGACAGCTATACATTCGTTTTTATAAGTTGGTCATTTATAAACTTGATAGTCTTGAAAGTTTGTTAACATGGGGAGGTGTACGTGCACATGTTTACAAGACAGCAAACTCTGGTTTAATTTGGGTATGCTGCAGTCTGTGTAATAACTAAAATAATGCATGCCGAAAAAAATACGCGCTGCTCACGCGCCGCTTACGCTTGCAGTGTGAAACAGGCGTTAAGCCTCGTTTACACTGCACGCGTCTGCGGCGCGTTACGGCTCCGGCAAGGTTTTGTTAAGTCCACTGCGCAGTGTCAACTCACACCAGAAGCATTTCAGAAGCGAAGCGGCTGAATTCGCAAGACCACGAGATTTGACTGTCTGATGTTTTTTCCTTGATTCTTTTCGTGTTTTTAATGGCTAAATGGTTATATTTTGTCCGGTTTAATTGTGTTTATTGCTATGCCATAATTTTTTTTTTGCTGTAGCCTACAGACGAAGTTTATACACTTAAAAGTCCAATGGATGACAAGAACAAAAAAAATTCAAGTTTTTCCAACTTCGAATCTCTTGTCTTCAGTTTCTGGCCTCCTAGCGATGTGAAATATGAGCGGGAGTTTACACAGGGTGATTATTTTGATTTTATTTTGTATTTGAGCTGTGCGTCTTGGACGCAGCGTCCGTCAAAAATAGGCTTGGCGCCTATCTTTAGCGAAGCGGCGCGGCGAGCCGCTTCTGGGAGGCTTCGAAAACGCACAGCGGCGCGGCTGGTGTAAACACGAGCATTGACTAGAGTGGCCGCGTATCAGCTCCGGTAGCCGCGTCGCAGCCGTAACGCGCCGCACACACGTGCAGTGTAAACGAGGCTTTAGACCCTTTTGACTCAACACAGAAACAGCAACGCGTGCGGCATGACATCACTTTGTTGCAGAGACGCTATTGGTTAAATGCCGGCAAAGTATTTATATAATATAAAAACAAAGTCTAATATAAAAACAAATATATTTATATTTGTTTTTATCGGATCGGGACTCGGTATCGGTAGATTCTCAAAATCAAATGACTCGGACTCGGACTCGAGGGCAAAAAAACCTGATCGGGACATCCCTAGTAAAGACATCGTTAAAACAGTCGACGTGACTGCAGTTGTTCAACCTAAATGTTATAAAGTGACGAGAATAGTTTTTGTGCACAAAAACAAAACAAAAATACAGACTTTATTTCAACAATTTCTTCTCTCCCCTGTCATTCTCTTACACTGTTGACGTAGTAAACACAGTGCAGTGCTTCCGGGTTCTACGTCAGAACGCAGACTCAGTATTGGCCGGCTCATGCGTCAGCATCACACACATGCATCGTGCTGCTCACGTGTGCAGCTTTGGCCAACACTGAGCCGGCGTTCTGATGTAAACACGGTGAACTAACCCTAAACTATAAAAAGACGCATACGTTTTTGCAAGTGAACGCAAATATCTTGTGAGCGAGCTTTGCATGTGAGAGAATGCAAAAGCATTGATTTGTACACATTGCTCATTCTCTTTTAGTTCATCAGAGCCAGAGAAGGCATCTGCAAGCAGCTCGTTCAATCATCAGTAGCAGTCCAGGATCTTCTGCGGTCTCCCAGCCCCCATCGCCCTCAGACAGAGCTTCTTCTGCAGTCCTGAATGACATACTCAGCCAAGTAGAGGAGGCTGTTCCCAGAACCATGACCCCAAGAGACCCTGGACCAGCACAAAACAATCTGTCCAGTGATCCAACAGCAGACACTCATGACGGGAATGGAAAACACGCAGATTAAGCCAAAGGGCAGCACTACAAAACATTAAAAAGTCCTAAATGTTAGCATTAGCTGTTACAGTTGTCTTGATTTTTTTTTTCTACAGTACTTCTAGAGGCACAATGAGTGACAGAGTGAATGAACTATAGAGCAGCTTGAGTCCAAAGTCAAAAGTTAATGGTTACACAATAAACCCAGCATTTAATTTCATTATAAAACAGTTAGTTCCTATCCTTGATTCTGAATAGCTGTGTTTTATTCACGATAAAACACTGCTATGACCGCTTCACTCAATGTTTTTGTGTGTCACTACACAACACCCTTAGCAACCACTCTTAGCAACATAAACTCTATGTTCTCAATTGATATTGTTCATTGAAGCTTACTATATTATATAGAAGAGTACTGTGAGAAAGAGATTGATTGAGCGAGTTTATTACCTGCATTCAGATTTAGCATTTTCCTTCAGGTCAGTCCTATGTTAATAAAAAAAAAAATCTGTTTAAATGTCCGATGTATTATCTTGTCCTTTTAACAGTTAGGGGGTTTTCCTGTTACTGACAGTGCTAGTCAAAGCATTTGTCAGTTGCGTCTTGTTCCGTGTTCACAATTCAGTATTTTCAATGTAAAAGTCTTTGCTACTGACTGACACACTCATAAAGACAGCCTTTGCCGCCATCTAATGGCGTAATAATGTAACTTCTGTTGCTGTTCACAGTCAGGGACTATTTTTTTCTGGCGGAAGGAAGGATTTTAGTGAAAGTTGACTTCATGAAAGTTGCATTGATACATATTTTTGGCTGTAATATTTGTATTATGTGGTAACCGTTTTATAAAAGCAATTAGGTACTCAAGGCTAGTGCTGTATCGTGAATAAGTGATGCTTTGCGTCATGCCTAACAACGCCCCTTCAGTCATGACTTATTCACGATACAGCACAGCCTCTCCTACCTTATTGCTTACATAAATTACACTATTTTACATTAATAATGGAACACATCAAAGTCTGTAGACTACTCTGTATTCTGTAGTACAGCATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200797 lncRNA upstream 7454 4255088 ~ 4255537 (+) True G176786
TU200784 lncRNA upstream 73603 4180473 ~ 4189388 (+) True G176773
TU200700 lncRNA upstream 151541 4071869 ~ 4111450 (+) True G176701
TU200729 lncRNA upstream 162532 4099803 ~ 4100459 (+) True G176723
TU200698 lncRNA upstream 192135 4070632 ~ 4070856 (+) True G176699
TU200779 lncRNA downstream 14353 4280614 ~ 4281394 (+) True G176768
TU200771 lncRNA downstream 38838 4305099 ~ 4306413 (+) False G176760
TU200770 lncRNA downstream 39423 4305684 ~ 4306561 (+) True G176760
TU200825 lncRNA downstream 113355 4379616 ~ 4380643 (+) True G176804
TU200839 lncRNA downstream 154027 4420288 ~ 4420493 (+) True G176815
CI01000037_04213179_04218057.mRNA mRNA upstream 44686 4212907 ~ 4218305 (+) False CI01000037_04213179_04218057
CI01000037_04175833_04178651.mRNA mRNA upstream 84340 4175833 ~ 4178651 (+) True CI01000037_04175833_04178651
CI01000037_04168194_04170478.mRNA mRNA upstream 91854 4168194 ~ 4171137 (+) True CI01000037_04168194_04170478
CI01000037_04080145_04081691.mRNA mRNA upstream 180185 4078481 ~ 4082806 (+) True CI01000037_04080145_04081691
CI01000037_04061560_04065802.mRNA mRNA upstream 196950 4061560 ~ 4066041 (+) False CI01000037_04061560_04065802
CI01000037_04295697_04296550.mRNA mRNA downstream 29436 4295697 ~ 4297038 (+) True CI01000037_04295697_04296550
CI01000037_04505291_04507162.mRNA mRNA downstream 238449 4504710 ~ 4507166 (+) False CI01000037_04505291_04507162
CI01000037_04566454_04567634.mRNA mRNA downstream 300193 4566454 ~ 4568152 (+) True CI01000037_04566454_04567634
CI01000037_04582339_04583876.mRNA mRNA downstream 316078 4582339 ~ 4583876 (+) True CI01000037_04582339_04583876
CI01000037_04591117_04597363.mRNA mRNA downstream 324493 4590754 ~ 4597460 (+) False CI01000037_04591117_04597363
TU200774 other upstream 44844 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057
TU200353 other upstream 1175023 2976862 ~ 3087968 (+) True G176377
TU200317 other upstream 1422938 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 2292600 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 2585584 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266

Expression Profile