RNA id: CI01000037_02907711_02908412.mRNA



Basic Information


Item Value
RNA id CI01000037_02907711_02908412.mRNA
length 1572
RNA type mRNA
GC content 0.44
exon number 1
gene id CI01000037_02907711_02908412
representative True

Chromosome Information


Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2907063 ~ 2908634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATTAAAACACAGCACGCTTACCTACAGCCACCGTCAACACATGAAAACAAAGAGGCAAAAACAGACGTGACACATCTCAGGTAACAACCAATCGGCCTTTAAATAGGAGATACTACTCGCTGATAGTCAATCACCTAATCCTGTTACACCAACAAAAAACTTGTAGCCAATCAGCATTAGGGGGCGTATGACTGTCGAGGAGAGAGAACGAGCAAGAGGGAGATTTGAAGAAAGACTGCAGAAAGAGAGATGAGATACAATACAAAAGAGCTCAAAAGAATATCACTGGAATGAAGGTTTATGACTGGGCAAGCGCTTTAGCACCCGCGTTAATAAAATACATTTTAGAATTCCAGTTGGGAGTTCCGGTTTAGCGTCTGCCATGTGAGGTCGCATGAGTCAGGAGCTCCGCAAACTGACTTTTAAATTCTGTTTTTAATACTTGATACACCATTTAAAAAAAAAAAAAAAAAAAAAAACTTGTGTATTTGCAGGTGACTTCTAGCAAATACTGTAGTCTTATTTGAGTTTCAATGATGACTACAAAAGCCCAACGACAAAAGAAGACCGACTCGGCCGTTACCGCCAGCTCGCCTCAGGAAGCGGCAAAGGGTGATGAACTTCCACGTCTGAGGTGGTTGCGATTATGGCCACAATTAACAGGTTTGAAAGTGGAATTCACGCAAAATTTGATGCGCACGCCGCTGAAATTCGAGGCGAAATTTCCCTGGTTCGAGAAGAAATGCACAACACGCTTTCATCTTTGAAAGAAGACGTCAAATCCCAGAACGAGCGCTTAACAAATCTTGATAACACTACCTCAGAATGTACGACCAGTCTTCACTCGCTTGAGCCTACGGTTGTTTCTCTACACAAAGAGATCGCTTCGCTGCAAGCCAAGTGCCTCGATTTAGAGTGTCGTTCCCGTAGATCCAATCTTCGCCTGGTGGGAATTCCGAAAGGATTGGAAGGCCGACAGCCAACTAAGTTCGTGGCGGATGCTTTGGCGGAAATATTTGATCTGCCTGAACCCCCACTCCTTGCTTGCGCTCACCGCACTCTTGCACCGAAACCCGCAGAGGGTAGCCGTTCGCGAGCCTTCGTTATTTGCTTTCATCGCTACGATGTTAAGGAGGATATTTGGCGGAAAGCGAGCTGGGGTGGGCAGCTCAAGTTCAGAGACAAAACTTTGTTCGTCTTTCCGGACTTTCCACCTGAGATTGCCAAGAAGCGGGCCCCTTACTATGAGGTGAAACGTCTTCTGAGGTCCATGCCAGATGTTAAGTACGGACTAAAGGGTCTTACCGGTTTCACAATCACAAAGAACGGCGATGAACATACGTTTTGATACTCCAGCTGCGGCAATAGCTTTTGTGAAACAACACCTGTTACCTGCTTGAATAGGTACAAGTAGTCTGCTGGAACTTAATGTCTCGTTTTCGATTGAAAGCACTTTTCTTAATACTGTGGTTTAATGTGTTTATATATATTTTAGTAGGCTATTTGTTTATTTGTATTAGATTGTATTCGCTGTATTTATTTGTTTGCGGAGATGCGTCCGGGGTGAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200333 lncRNA upstream 43694 2863024 ~ 2863369 (+) True G176361
TU200328 lncRNA upstream 54337 2852378 ~ 2852726 (+) True G176357
TU200326 lncRNA upstream 57137 2849609 ~ 2849926 (+) True G176355
TU200299 lncRNA upstream 80756 2825982 ~ 2826307 (+) True G176328
TU200294 lncRNA upstream 83961 2822713 ~ 2823102 (+) True G176323
TU200442 lncRNA downstream 560868 3469502 ~ 3469710 (+) True G176466
TU200448 lncRNA downstream 569274 3477908 ~ 3478177 (+) True G176472
TU200451 lncRNA downstream 574205 3482839 ~ 3483057 (+) True G176475
TU200470 lncRNA downstream 596073 3504707 ~ 3504925 (+) True G176494
TU200477 lncRNA downstream 626591 3535225 ~ 3535554 (+) True G176501
CI01000037_02755842_02769590.mRNA mRNA upstream 135897 2755842 ~ 2771166 (+) True CI01000037_02755842_02769590
CI01000037_02700254_02707760.mRNA mRNA upstream 198589 2699595 ~ 2708474 (+) True CI01000037_02700254_02707760
CI01000037_02527352_02576225.mRNA mRNA upstream 330359 2526102 ~ 2576704 (+) True CI01000037_02527352_02576225
CI01000037_02414352_02418569.mRNA mRNA upstream 488311 2414352 ~ 2418752 (+) True CI01000037_02414352_02418569
CI01000037_02405252_02406221.mRNA mRNA upstream 500626 2404783 ~ 2406437 (+) True CI01000037_02405252_02406221
CI01000037_02909777_02910445.mRNA mRNA downstream 966 2909600 ~ 2910489 (+) True CI01000037_02909777_02910445
CI01000037_02965392_02966406.mRNA mRNA downstream 56758 2965392 ~ 2966433 (+) True CI01000037_02965392_02966406
CI01000037_03102630_03108094.mRNA mRNA downstream 193996 3102630 ~ 3109016 (+) True CI01000037_03102630_03108094
CI01000037_03120937_03121997.mRNA mRNA downstream 212303 3120937 ~ 3122022 (+) True CI01000037_03120937_03121997
CI01000037_03126487_03134212.mRNA mRNA downstream 217389 3126023 ~ 3135221 (+) True CI01000037_03126487_03134212
TU200317 other upstream 67010 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 936672 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 1229656 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 1292789 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 1292789 1613890 ~ 1614274 (+) False G174949
TU200353 other downstream 68228 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 1304649 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile