Gene
RNA
| Item | Value |
|---|---|
| RNA id | CI01000037_02527352_02576225.mRNA |
| length | 3298 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | CI01000037_02527352_02576225 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000037 |
| NCBI id | null |
| chromosome length | 4612320 |
| location | 2526102 ~ 2576704 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| id | description |
|---|---|
| K04256 | OPN3; c-opsin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU199666 | lncRNA | upstream | 112748 | 2412901 ~ 2413354 (+) | False | G175777 |
| TU199667 | lncRNA | upstream | 112779 | 2412901 ~ 2413323 (+) | True | G175777 |
| TU199654 | lncRNA | upstream | 213391 | 2312207 ~ 2312711 (+) | True | G175769 |
| TU199652 | lncRNA | upstream | 222565 | 2302737 ~ 2303537 (+) | True | G175767 |
| TU199502 | lncRNA | upstream | 225752 | 2298327 ~ 2300350 (+) | False | G175630 |
| TU199751 | lncRNA | downstream | 29674 | 2606378 ~ 2609995 (+) | True | G175858 |
| TU199765 | lncRNA | downstream | 48700 | 2625404 ~ 2626599 (+) | True | G175871 |
| TU199770 | lncRNA | downstream | 59391 | 2636095 ~ 2636309 (+) | True | G175875 |
| TU199772 | lncRNA | downstream | 69135 | 2645839 ~ 2646168 (+) | True | G175877 |
| TU199741 | lncRNA | downstream | 92802 | 2669506 ~ 2715511 (+) | True | G175850 |
| CI01000037_02414352_02418569.mRNA | mRNA | upstream | 107350 | 2414352 ~ 2418752 (+) | True | CI01000037_02414352_02418569 |
| CI01000037_02405252_02406221.mRNA | mRNA | upstream | 119665 | 2404783 ~ 2406437 (+) | True | CI01000037_02405252_02406221 |
| CI01000037_02378066_02392175.mRNA | mRNA | upstream | 133231 | 2378066 ~ 2392871 (+) | True | CI01000037_02378066_02392175 |
| CI01000037_02334480_02338932.mRNA | mRNA | upstream | 187113 | 2331464 ~ 2338989 (+) | True | CI01000037_02334480_02338932 |
| CI01000037_02282458_02287205.mRNA | mRNA | upstream | 238817 | 2281347 ~ 2287285 (+) | True | CI01000037_02282458_02287205 |
| CI01000037_02700254_02707760.mRNA | mRNA | downstream | 122891 | 2699595 ~ 2708474 (+) | True | CI01000037_02700254_02707760 |
| CI01000037_02755842_02769590.mRNA | mRNA | downstream | 179138 | 2755842 ~ 2771166 (+) | True | CI01000037_02755842_02769590 |
| CI01000037_02907711_02908412.mRNA | mRNA | downstream | 330359 | 2907063 ~ 2908634 (+) | True | CI01000037_02907711_02908412 |
| CI01000037_02909777_02910445.mRNA | mRNA | downstream | 332896 | 2909600 ~ 2910489 (+) | True | CI01000037_02909777_02910445 |
| CI01000037_02965392_02966406.mRNA | mRNA | downstream | 388688 | 2965392 ~ 2966433 (+) | True | CI01000037_02965392_02966406 |
| TU199493 | other | upstream | 555711 | 1970185 ~ 1970391 (+) | True | G175626 |
| TU198758 | other | upstream | 848695 | 1677210 ~ 1677407 (+) | True | CI01000037_01674415_01677266 |
| TU198741 | other | upstream | 911828 | 1613876 ~ 1614274 (+) | False | G174949 |
| TU198740 | other | upstream | 911828 | 1613890 ~ 1614274 (+) | False | G174949 |
| TU198421 | other | upstream | 1536343 | 989270 ~ 989759 (+) | True | G174689 |
| TU200317 | other | downstream | 263056 | 2839760 ~ 2840053 (+) | True | G176346 |
| TU200353 | other | downstream | 400158 | 2976862 ~ 3087968 (+) | True | G176377 |
| TU200774 | other | downstream | 1636579 | 4213283 ~ 4218147 (+) | True | CI01000037_04213179_04218057 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00073864 | True | 1930 | mRNA | 0.48 | 4 | NC_007120.7 | 6118362 ~ 6208067 (-) |
| bowfin (Amia calva) | AMCG00014352 | True | 1095 | mRNA | 0.53 | 4 | CM030128.1 | 10229000 ~ 10242261 (+) |
