RNA id: TU199772


Basic Information

Item Value
RNA id TU199772
length 330
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G175877
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2645839 ~ 2646168 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACCCTGTCGCCGGTTCACCACTGTTCCTTCCTTGGACCACTTTGGATGGATACTGACCACTGCAGACCGGGAACACCCCACAAGAGTTGCAGTTTTGGAGATGCTCTGACCCAGTCATCTAGCCATCACAATCTGGCTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCTAACACATCAACTTTGAGGACAAAATGTTCACTTGCTGCCTAATATATCCCACCCACTAACAGGTGCCGTGATGAAGAGATAAGCACTGTTATTCACTTCACCTGTCAGTGGTCATAATGTTATGCCTGATCGATGTATAGTGCTACTGCCAACAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199770 lncRNA upstream 9530 2636095 ~ 2636309 (+) True G175875
TU199765 lncRNA upstream 19240 2625404 ~ 2626599 (+) True G175871
TU199751 lncRNA upstream 35844 2606378 ~ 2609995 (+) True G175858
TU199666 lncRNA upstream 232485 2412901 ~ 2413354 (+) False G175777
TU199667 lncRNA upstream 232516 2412901 ~ 2413323 (+) True G175777
TU199741 lncRNA downstream 23338 2669506 ~ 2715511 (+) True G175850
TU199786 lncRNA downstream 44183 2690351 ~ 2691089 (+) True G175887
TU199740 lncRNA downstream 69504 2715672 ~ 2720970 (+) True G175849
TU200241 lncRNA downstream 140693 2786861 ~ 2787562 (+) True G176273
TU200262 lncRNA downstream 151233 2797401 ~ 2798084 (+) True G176292
CI01000037_02527352_02576225.mRNA mRNA upstream 69135 2526102 ~ 2576704 (+) True CI01000037_02527352_02576225
CI01000037_02414352_02418569.mRNA mRNA upstream 227087 2414352 ~ 2418752 (+) True CI01000037_02414352_02418569
CI01000037_02405252_02406221.mRNA mRNA upstream 239402 2404783 ~ 2406437 (+) True CI01000037_02405252_02406221
CI01000037_02378066_02392175.mRNA mRNA upstream 252968 2378066 ~ 2392871 (+) True CI01000037_02378066_02392175
CI01000037_02334480_02338932.mRNA mRNA upstream 306850 2331464 ~ 2338989 (+) True CI01000037_02334480_02338932
CI01000037_02700254_02707760.mRNA mRNA downstream 53427 2699595 ~ 2708474 (+) True CI01000037_02700254_02707760
CI01000037_02755842_02769590.mRNA mRNA downstream 109674 2755842 ~ 2771166 (+) True CI01000037_02755842_02769590
CI01000037_02907711_02908412.mRNA mRNA downstream 260895 2907063 ~ 2908634 (+) True CI01000037_02907711_02908412
CI01000037_02909777_02910445.mRNA mRNA downstream 263432 2909600 ~ 2910489 (+) True CI01000037_02909777_02910445
CI01000037_02965392_02966406.mRNA mRNA downstream 319224 2965392 ~ 2966433 (+) True CI01000037_02965392_02966406
TU199493 other upstream 675448 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 968432 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 1031565 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 1031565 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 1656080 989270 ~ 989759 (+) True G174689
TU200317 other downstream 193592 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 330694 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 1567115 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile