RNA id: TU223845


Basic Information

Item Value
RNA id TU223845
length 288
lncRNA type read_through
GC content 0.42
exon number 3
gene id G197158
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4648950 ~ 4708769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATGTCTGTATAATTTCTGCCTGAAGTCTCACACCTATATGACCCTTCATCCTTCTTTCTGAGGTCAGAAATGAGCAGAGACAGATTTGCTGGAGAACTTTCATTAAACAGCTTCAGTCTGCCCTTGTAGTTTTCATCTTCAAAAACTTTAATCCATCCTGTTGTGTAATACCATGTGAATGACTTTACTGTAGATTGAGGGTCAGTACAGGAGCAGGGCAGCAGGACTGATCCACCTGTGTAACCTGTTACTTCTTCAGACTGTCCATGACTTGAAAGTCGACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223839 lncRNA upstream 5037 4641181 ~ 4643913 (+) False G197153
TU223838 lncRNA upstream 5037 4643313 ~ 4643913 (+) True G197153
TU223550 lncRNA upstream 205068 4437237 ~ 4443882 (+) True G196889
TU223810 lncRNA upstream 212698 4435878 ~ 4436252 (+) True G197140
TU223806 lncRNA upstream 226991 4421736 ~ 4421959 (+) True G197136
TU223856 lncRNA downstream 13420 4722189 ~ 4736190 (+) True G197169
TU223857 lncRNA downstream 27495 4736264 ~ 4744725 (+) True G197170
TU223859 lncRNA downstream 36093 4744862 ~ 4746106 (+) True G197172
TU223860 lncRNA downstream 49752 4758521 ~ 4758997 (+) True G197173
TU223922 lncRNA downstream 119035 4827804 ~ 4828132 (+) True G197231
CI01000046_04615766_04638586.mRNA mRNA upstream 10008 4615766 ~ 4638942 (+) True CI01000046_04615766_04638586
CI01000046_04602081_04604842.mRNA mRNA upstream 43329 4602081 ~ 4605621 (+) True CI01000046_04602081_04604842
CI01000046_04594068_04600391.mRNA mRNA upstream 47962 4593711 ~ 4600988 (+) True CI01000046_04594068_04600391
CI01000046_04584213_04592141.mRNA mRNA upstream 56660 4583662 ~ 4592290 (+) True CI01000046_04584213_04592141
CI01000046_04579543_04581492.mRNA mRNA upstream 67410 4579281 ~ 4581540 (+) True CI01000046_04579543_04581492
CI01000046_04806234_04808207.mRNA mRNA downstream 96586 4805355 ~ 4808335 (+) True CI01000046_04806234_04808207
CI01000046_04811748_04819011.mRNA mRNA downstream 102841 4811610 ~ 4819368 (+) True CI01000046_04811748_04819011
CI01000046_04841558_04852685.mRNA mRNA downstream 132789 4841558 ~ 4853176 (+) True CI01000046_04841558_04852685
CI01000046_04861221_04879259.mRNA mRNA downstream 152452 4861221 ~ 4880669 (+) True CI01000046_04861221_04879259
CI01000046_05279865_05281709.mRNA mRNA downstream 571096 5279865 ~ 5282127 (+) True CI01000046_05279865_05281709
TU223530 other upstream 227263 4415530 ~ 4421687 (+) True G196869
TU223789 other upstream 277520 4371011 ~ 4371430 (+) True G197121
TU223720 other upstream 499170 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 703450 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 1454679 3186995 ~ 3194271 (+) True G196936
TU224052 other downstream 565613 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 1017352 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 2111169 6819938 ~ 6820389 (+) True G197788

Expression Profile