RNA id: CI01000051_07978982_07979269.mRNA


Basic Information

Item Value
RNA id CI01000051_07978982_07979269.mRNA
length 914
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000051_07978982_07979269
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7978390 ~ 7979303 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAATGGTTAAAAATCAGGATTACACTGTTTTCAGTCTTTAATCTTGTTTTTCATGGCATTCCTAGTTGTACTTTTTGCCTTCAATAAATACTTCTTTACTCAAGTCTGTGTACATGACGTTTATTCATGTGTCAATAAATAAAGGACAGCTGCAATGCCTTTACGAGTGACTTTATTACTGAAATGACATACATCACGCAAGTACGAAAGAGTTTGGACTTAAAGTTAAATCATACTATGACCCTTGCGGAAACACCTCGCGTGGAGTAGCTACCATCGTATTTGCGTTGTGTATGATTCGGGCAACAAAAAATCTCACAATAACCACAGTCTACATCAAAATACTACAATATTAATGTTTTAACCCTCTGGAAAAAGGAGAGTAGAACGTGTTAATTGTCTCAGAAAGGAACCTGGTCTCGTTGTTGATTCCCCTCAGGACGCAATTTACCGTAACACTACGTGTGCTCACTGTGCTGTCGTCACGTCTTCGATCAGGAAGAGGAACTGGACTCAGTCGTTAAAGCGAACTTCATATTTGTTTGTGGATCTTCTCTTGCCTTTAAAAACCACGAACTCAAGATACTATGAAACATTTAAGACTTCTGCCTCTGCTTTTGACTTTGTGGGCAGTTTCTTACGCCGGTGACACGAGCAATGGGCTGAAGACCAGTAACGTTACCACTAAACAACCCGCACTCAAGAACAATTCCAGCATCAGCAACAGTACCGAAAAGTCCGATAAAAACATCACCACCACCACCACCAAAATGGGCTTCGATGTGAACGGCGCGATGATTAACCGGGCTCTATATGTTCTTATCGGGATCACGGCCATCGGAGTTCTGTATTTCTTAGTGAGAGCGGTCCGGTGAGTGATCTGGGAATTATGTCACATGAGGTTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251035 lncRNA upstream 111362 7866916 ~ 7867028 (+) True G221315
TU251053 lncRNA upstream 137616 7804351 ~ 7840774 (+) True G221333
TU251136 lncRNA upstream 522853 7455331 ~ 7455537 (+) True G221409
TU251135 lncRNA upstream 526379 7451740 ~ 7452011 (+) True G221408
TU251131 lncRNA upstream 527678 7450479 ~ 7450712 (+) True G221406
TU251268 lncRNA downstream 16719 7996022 ~ 7996297 (+) True G221530
TU251276 lncRNA downstream 29612 8008915 ~ 8009351 (+) True G221538
TU251277 lncRNA downstream 36941 8016244 ~ 8016535 (+) True G221539
TU251290 lncRNA downstream 62314 8041617 ~ 8041854 (+) True G221552
TU252505 lncRNA downstream 244647 8223950 ~ 8224280 (+) True G222631
CI01000051_07963621_07976671.mRNA mRNA upstream 181 7963621 ~ 7978209 (+) True CI01000051_07963621_07976671
CI01000051_07954270_07957397.mRNA mRNA upstream 20831 7954270 ~ 7957559 (+) True CI01000051_07954270_07957397
CI01000051_07946087_07950464.mRNA mRNA upstream 26909 7946016 ~ 7951481 (+) True CI01000051_07946087_07950464
CI01000051_07938052_07941645.mRNA mRNA upstream 36279 7937692 ~ 7942111 (+) True CI01000051_07938052_07941645
CI01000051_07913334_07929103.mRNA mRNA upstream 49208 7913334 ~ 7929182 (+) True CI01000051_07913334_07929103
CI01000051_08046197_08069874.mRNA mRNA downstream 66592 8045895 ~ 8069917 (+) True CI01000051_08046197_08069874
CI01000051_08171018_08172280.mRNA mRNA downstream 191715 8171018 ~ 8172544 (+) True CI01000051_08171018_08172280
CI01000051_08211233_08214513.mRNA mRNA downstream 230419 8209722 ~ 8214696 (+) False CI01000051_08211233_08214513
CI01000051_08381644_08388611.mRNA mRNA downstream 402288 8381591 ~ 8389116 (+) True CI01000051_08381644_08388611
CI01000051_08425890_08429863.mRNA mRNA downstream 445394 8424697 ~ 8429965 (+) True CI01000051_08425890_08429863
TU251108 other upstream 565383 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 635844 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 1145322 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2926357 5018305 ~ 5052033 (+) False G219803
TU251044 other downstream 126340 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 363639 8342942 ~ 8343448 (+) True G222727

Expression Profile