RNA id: CI01000051_08171018_08172280.mRNA


Basic Information

Item Value
RNA id CI01000051_08171018_08172280.mRNA
length 619
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000051_08171018_08172280
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 8171018 ~ 8172544 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCTGTAGTGAAGGGGGCTGCTTTGATGGTGTGAAGAATGGAGGATGGAGCAGATTCTTGCATGGTGAATACACAGTGGAGGTGGCTATCAACGACTACCTGGACATCTACTGTCCACACTATGAGGACCATCTTCCTCAGGAGCGCATGGAACGCTACATCCTTTTCATGGTCAACTATGATGGCTACACCACCTGCAACCACCACATGAAAGGCTTCAAGCGCTGGGAATGCAACCGCCCAATGAGTCCGAATGGGCCCCTTAAGTTCTCAGAGAAGTTCCAGCTGTTCACACCCTTCTCCCTGGGCTTTGAGTTTCGCCCAGGCCATGAATACTACTACATCTGTGAGTAGCCTTCTCCTTTTAACTCTCAGACTTCAACTTCGAATCCCTCATCTATGTTTTCTTGTGACCAGGTGTCAGTATGGCCCCAGGGTGCAATCATTCACTGAACTGATGGTTCTTGGGTTACAGGAACTGGGGTGTAGAGGGTAAAGGAAGACTTAATAAGGATGCGTAGACTTCACAACAACATTTGATCAATAACATGTGCCACATGGTTCAGTCTGCTGAAACCTGTTATGTGGTCTCTAGAGGCATATGGCTGAAAGAAAAAA

Function

GO: NA

KEGG:

id description
K05462 EFNA; ephrin-A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251290 lncRNA upstream 129164 8041617 ~ 8041854 (+) True G221552
TU251277 lncRNA upstream 154483 8016244 ~ 8016535 (+) True G221539
TU251276 lncRNA upstream 161667 8008915 ~ 8009351 (+) True G221538
TU251268 lncRNA upstream 174721 7996022 ~ 7996297 (+) True G221530
TU251035 lncRNA upstream 303990 7866916 ~ 7867028 (+) True G221315
TU252505 lncRNA downstream 51406 8223950 ~ 8224280 (+) True G222631
TU252516 lncRNA downstream 60122 8232666 ~ 8232884 (+) True G222642
TU252519 lncRNA downstream 60926 8233470 ~ 8234002 (+) True G222645
TU252527 lncRNA downstream 70820 8243364 ~ 8243605 (+) True G222653
TU252530 lncRNA downstream 73996 8246540 ~ 8246748 (+) True G222656
CI01000051_08046197_08069874.mRNA mRNA upstream 101101 8045895 ~ 8069917 (+) True CI01000051_08046197_08069874
CI01000051_07978982_07979269.mRNA mRNA upstream 191715 7978390 ~ 7979303 (+) True CI01000051_07978982_07979269
CI01000051_07963621_07976671.mRNA mRNA upstream 192809 7963621 ~ 7978209 (+) True CI01000051_07963621_07976671
CI01000051_07954270_07957397.mRNA mRNA upstream 213459 7954270 ~ 7957559 (+) True CI01000051_07954270_07957397
CI01000051_07946087_07950464.mRNA mRNA upstream 219537 7946016 ~ 7951481 (+) True CI01000051_07946087_07950464
CI01000051_08211233_08214513.mRNA mRNA downstream 37178 8209722 ~ 8214696 (+) False CI01000051_08211233_08214513
CI01000051_08381644_08388611.mRNA mRNA downstream 209047 8381591 ~ 8389116 (+) True CI01000051_08381644_08388611
CI01000051_08425890_08429863.mRNA mRNA downstream 252153 8424697 ~ 8429965 (+) True CI01000051_08425890_08429863
TU251108 other upstream 758011 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 828472 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 1337950 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 3118985 5018305 ~ 5052033 (+) False G219803
TU252626 other downstream 170398 8342942 ~ 8343448 (+) True G222727

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006571 False 1443 processed_transcript 0.45 4 NC_007122.7 14431273 ~ 14639060 (+)