RNA id: TU252595


Basic Information

Item Value
RNA id TU252595
length 231
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G222716
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 8330540 ~ 8330770 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAAGACACTCACTCCCAGTGTTTGGTCTCATCAGACTTACATGGACTGCTTACCTGATACTTACCAGCGTCTTCCCGTGCCTTCCTCACATCGTCTTCTGTCTCCAGTTATCTGCCCCTCGCCGTATTCCAAACCTGCAAAAGAGATCTCTCATTATCTTCAGCTAAGTGACTGTTTCAAAGTGCTTGTTCATCTACTCACCTGCATTCAACTATCCCTGTGTTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252534 lncRNA upstream 76584 8253521 ~ 8253956 (+) True G222660
TU252530 lncRNA upstream 83792 8246540 ~ 8246748 (+) True G222656
TU252527 lncRNA upstream 86935 8243364 ~ 8243605 (+) True G222653
TU252519 lncRNA upstream 96538 8233470 ~ 8234002 (+) True G222645
TU252516 lncRNA upstream 97656 8232666 ~ 8232884 (+) True G222642
TU252597 lncRNA downstream 4438 8335208 ~ 8335484 (+) False G222718
TU252606 lncRNA downstream 4438 8335208 ~ 8335670 (+) True G222718
TU252619 lncRNA downstream 6479 8337249 ~ 8337565 (+) True G222720
TU252630 lncRNA downstream 11371 8342141 ~ 8342516 (+) True G222728
TU252636 lncRNA downstream 13017 8343787 ~ 8344318 (+) True G222731
CI01000051_08211233_08214513.mRNA mRNA upstream 115844 8209722 ~ 8214696 (+) False CI01000051_08211233_08214513
CI01000051_08171018_08172280.mRNA mRNA upstream 157996 8171018 ~ 8172544 (+) True CI01000051_08171018_08172280
CI01000051_08046197_08069874.mRNA mRNA upstream 260623 8045895 ~ 8069917 (+) True CI01000051_08046197_08069874
CI01000051_07978982_07979269.mRNA mRNA upstream 351237 7978390 ~ 7979303 (+) True CI01000051_07978982_07979269
CI01000051_07963621_07976671.mRNA mRNA upstream 352331 7963621 ~ 7978209 (+) True CI01000051_07963621_07976671
CI01000051_08381644_08388611.mRNA mRNA downstream 50821 8381591 ~ 8389116 (+) True CI01000051_08381644_08388611
CI01000051_08425890_08429863.mRNA mRNA downstream 93927 8424697 ~ 8429965 (+) True CI01000051_08425890_08429863
TU251044 other upstream 116269 8105643 ~ 8128075 (+) True G221324
TU251108 other upstream 917533 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 987994 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 1497472 6825799 ~ 6833068 (+) True G221187
TU249300 other upstream 3280730 5045115 ~ 5049810 (+) False G219803
TU252626 other downstream 12172 8342942 ~ 8343448 (+) True G222727

Expression Profile