Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016624 |
| length | 5935 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 20 |
| gene id | XLOC_008249 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 2856696 ~ 2890101 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006302 | double-strand break repair | biological_process |
| GO:0006303 | double-strand break repair via nonhomologous end joining | biological_process |
| GO:0042138 | meiotic DNA double-strand break formation | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0031573 | intra-S DNA damage checkpoint | biological_process |
| GO:0007095 | mitotic G2 DNA damage checkpoint | biological_process |
| GO:0051321 | meiotic cell cycle | biological_process |
| GO:0000723 | telomere maintenance | biological_process |
| GO:0000724 | double-strand break repair via homologous recombination | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0097552 | mitochondrial double-strand break repair via homologous recombination | biological_process |
| GO:0035861 | site of double-strand break | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030870 | Mre11 complex | cellular_component |
| GO:0008408 | 3'-5' exonuclease activity | molecular_function |
| GO:0000014 | single-stranded DNA endodeoxyribonuclease activity | molecular_function |
| GO:0030145 | manganese ion binding | molecular_function |
| GO:0004518 | nuclease activity | molecular_function |
| GO:0004519 | endonuclease activity | molecular_function |
| GO:0004527 | exonuclease activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2638 | Predicted to enable single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in mitotic DNA damage checkpoint signaling and nucleic acid metabolic process. Predicted to act upstream of or within double-strand break repair and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be part of Mre11 complex. Predicted to be active in site of double-strand break. Is expressed in alar plate midbrain region; digestive system; eye; immature eye; and midbrain. Human ortholog(s) of this gene implicated in breast carcinoma; endometrial cancer; stomach carcinoma; and urinary bladder cancer. Orthologous to human MRE11 (MRE11 homolog, double strand break repair nuclease). |
| ensembl_id | ENSDART00000163434 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018750 | lncRNA | upstream | 1067 | 2844812 ~ 2855629 (+) | True | XLOC_008248 |
| TCONS_00018868 | lncRNA | upstream | 40982 | 2814070 ~ 2815714 (+) | True | XLOC_008247 |
| TCONS_00016615 | lncRNA | upstream | 433085 | 2421835 ~ 2423611 (+) | True | XLOC_008240 |
| TCONS_00018865 | lncRNA | upstream | 1138067 | 1693197 ~ 1718629 (+) | False | XLOC_008232 |
| TCONS_00018866 | lncRNA | upstream | 1138067 | 1715361 ~ 1718629 (+) | False | XLOC_008232 |
| TCONS_00018870 | lncRNA | downstream | 98690 | 2988791 ~ 2989951 (+) | True | XLOC_008251 |
| TCONS_00016627 | lncRNA | downstream | 279873 | 3169974 ~ 3201297 (+) | False | XLOC_008253 |
| TCONS_00016628 | lncRNA | downstream | 306050 | 3196151 ~ 3201213 (+) | True | XLOC_008253 |
| TCONS_00018871 | lncRNA | downstream | 347494 | 3237595 ~ 3239957 (+) | True | XLOC_008255 |
| TCONS_00018872 | lncRNA | downstream | 492713 | 3382814 ~ 3383114 (+) | True | XLOC_008258 |
| TCONS_00016621 | mRNA | upstream | 278557 | 2559875 ~ 2578139 (+) | True | XLOC_008244 |
| TCONS_00016619 | mRNA | upstream | 312862 | 2520319 ~ 2543834 (+) | False | XLOC_008243 |
| TCONS_00016620 | mRNA | upstream | 313137 | 2534740 ~ 2543559 (+) | True | XLOC_008243 |
| TCONS_00016617 | mRNA | upstream | 348708 | 2498496 ~ 2507988 (+) | False | XLOC_008242 |
| TCONS_00016618 | mRNA | upstream | 353531 | 2500510 ~ 2503165 (+) | True | XLOC_008242 |
| TCONS_00016626 | mRNA | downstream | 235035 | 3125136 ~ 3162586 (+) | True | XLOC_008252 |
| TCONS_00016629 | mRNA | downstream | 329033 | 3219134 ~ 3223448 (+) | True | XLOC_008254 |
| TCONS_00016630 | mRNA | downstream | 356374 | 3246475 ~ 3251221 (+) | True | XLOC_008256 |
| TCONS_00016631 | mRNA | downstream | 394315 | 3284416 ~ 3368645 (+) | False | XLOC_008257 |
| TCONS_00016632 | mRNA | downstream | 394315 | 3284416 ~ 3379041 (+) | False | XLOC_008257 |
| TCONS_00016623 | other | upstream | 170990 | 2685055 ~ 2685706 (+) | True | XLOC_008246 |
| TCONS_00016622 | other | upstream | 182106 | 2673935 ~ 2674590 (+) | True | XLOC_008245 |
| TCONS_00016611 | other | upstream | 498071 | 2358511 ~ 2358625 (+) | True | XLOC_008239 |
| TCONS_00016606 | other | upstream | 982918 | 1873658 ~ 1873778 (+) | True | XLOC_008236 |
| TCONS_00016599 | other | upstream | 1288354 | 1560665 ~ 1568342 (+) | True | XLOC_008228 |
| TCONS_00016634 | other | downstream | 616208 | 3506309 ~ 3506423 (+) | True | XLOC_008259 |
| TCONS_00016665 | other | downstream | 2965010 | 5855111 ~ 5855225 (+) | True | XLOC_008292 |
| TCONS_00016677 | other | downstream | 3668949 | 6559050 ~ 6559185 (+) | True | XLOC_008299 |
| TCONS_00016680 | other | downstream | 3788420 | 6678521 ~ 6727082 (+) | True | XLOC_008301 |
| TCONS_00016681 | other | downstream | 3880485 | 6770586 ~ 6772120 (+) | True | XLOC_008302 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000363_00072304_00086062.mRNA | True | 946 | mRNA | 0.44 | 7 | CI01000363 | 72123 ~ 86062 (-) |
