RNA id: TCONS_00018865


Basic Information

Item Value
RNA id TCONS_00018865
length 657
lncRNA type sense_over
GC content 0.48
exon number 3
gene id XLOC_008232
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1693197 ~ 1718629 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGAATCTGGCGGTCTGGATCTGGGGTAGGTTTAGGTTGGAAATTTGGCAGTCTGGATATAGTGGTCTAGATATAGTGGTCTGAATCTGGCGGTCTGGATCTGGCGGTCTGGATATGGGGGGTCTGGATCTGGCGATCTGGATCTGGCGTTCTGGATCTGGCGGTCTGCATATGGGGGTCTGGATCTGGCGGTCTGGATCTGACGGTCTGGATATGGGGGGTCTGGATATGGGGGTCTGGATATGGGGTTCTGGATATGGGGATCCGGATCTGGCGGTCTGAATCTGGCGGTCTCGATCGAGCGACCGGATATGGAGATCTAGATATGGGGATCTGGATCTTGTGGTCTGGATCTAGGGATCTGGATCTAGGGGTCTGGATCTGGTGTTTGAATTGGATTGGGTCTGGATATGGGGGTCTGGATATGAGGGGTCTGGATCAGGCATTCTGGATCTGGCGGTCTGGATCTGGGGGTCTGGATCTAGGGGTCTGGATCTAGGGGTCTGAATTGGATTGGGTACCTCTGCTCTTAATGatccatttaaattgttttttttaattctgcattTCTTAGactttttaataatacaaaaaaaaggaaaaatgccccaaaaagagtaaaaaaaatattgttttgtttctagaaattatgtcaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016601 lncRNA upstream 24979 1661092 ~ 1668218 (+) True XLOC_008231
TCONS_00018749 lncRNA upstream 458504 1221817 ~ 1234693 (+) True XLOC_008225
TCONS_00018748 lncRNA upstream 473074 1207720 ~ 1220123 (+) False XLOC_008224
TCONS_00018747 lncRNA upstream 473074 1207720 ~ 1220123 (+) True XLOC_008224
TCONS_00018746 lncRNA upstream 481636 1207720 ~ 1211561 (+) False XLOC_008224
TCONS_00016615 lncRNA downstream 703206 2421835 ~ 2423611 (+) True XLOC_008240
TCONS_00018868 lncRNA downstream 1095441 2814070 ~ 2815714 (+) True XLOC_008247
TCONS_00018750 lncRNA downstream 1126183 2844812 ~ 2855629 (+) True XLOC_008248
TCONS_00018751 lncRNA downstream 1146995 2865624 ~ 2865929 (+) True XLOC_008250
TCONS_00018869 lncRNA downstream 1168071 2886700 ~ 2887498 (+) True XLOC_008249
TCONS_00016600 mRNA upstream 20736 1653779 ~ 1672461 (+) False XLOC_008231
TCONS_00016596 mRNA upstream 120068 1534644 ~ 1573129 (+) False XLOC_008228
TCONS_00016595 mRNA upstream 244492 1440364 ~ 1448705 (+) True XLOC_008227
TCONS_00016593 mRNA upstream 256490 1372343 ~ 1436707 (+) False XLOC_008226
TCONS_00016594 mRNA upstream 256490 1397811 ~ 1436707 (+) True XLOC_008226
TCONS_00016603 mRNA downstream 47359 1765988 ~ 1795631 (+) False XLOC_008234
TCONS_00016604 mRNA downstream 48105 1766734 ~ 1783965 (+) True XLOC_008234
TCONS_00016605 mRNA downstream 77684 1796313 ~ 1802034 (+) True XLOC_008235
TCONS_00016607 mRNA downstream 173060 1891689 ~ 1898233 (+) False XLOC_008237
TCONS_00016608 mRNA downstream 173063 1891692 ~ 1897728 (+) True XLOC_008237
TCONS_00016599 other upstream 124855 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016598 other upstream 149254 1543857 ~ 1543943 (+) True XLOC_008230
TCONS_00016597 other upstream 149429 1543686 ~ 1543768 (+) True XLOC_008229
TCONS_00016581 other upstream 614093 1078989 ~ 1079104 (+) True XLOC_008218
TCONS_00016606 other downstream 155029 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016611 other downstream 639882 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016622 other downstream 955306 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016623 other downstream 966426 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016634 other downstream 1787680 3506309 ~ 3506423 (+) True XLOC_008259

Expression Profile

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