RNA id: TCONS_00016605


Basic Information

Item Value
RNA id TCONS_00016605
length 1716
RNA type mRNA
GC content 0.54
exon number 3
gene id XLOC_008235
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1796313 ~ 1802034 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataaataatttggctaataattttgacctcagcTCTACATAAATCACGCTACTATTAGTACAATCAAACCCCCCTCTACCATCTTTAATTGGTGAATTTTGCAGTCTGATGATGACAGCCATCTGCTGGGGTTCAGTCCCCCTATTGTCAGAACTGAAGCCCTTCCCCCGACTCCAAACCACCGCTCATTTTGCAGCCGAGTTCTCCAAATACACACGATGTGCTAACCTTGAGATAAAACACAACGCTGCAGCACTCGTGTTTAATGTGTTTATGTACAGTACACCGGATTATCATGAATTATAAACGCTGAGGTGACGTCAGGGTGAACTCGACTCTTACGGACTCCTTTTCCTTGACCAGTCGGACTTTCTCTGAGCTGACCTCATGGCTAACCCCGATACAGATTTGCTCCTGGTCACCATGCACTTGCTGACCAACCCCGGCGACTCTCTCCTACTCCAGCACACCCTTGACTGCCTCCTGAAGTGGGTTCGTCCGGGTCTCAGACTCTTCCACGTGTCTGAGCGGGCCTGTCCCATCCATGCCTATGACAGAACCAACCTGTGCCCTGCATCCGGCTACCCGTCACATGCGGTGACCATATTCCTGCACGAGTCCTACGGAGAAGAGCGTATTCTTAGGGTGCTGGAATTTCTGCAGTGTCCACCCTGGCAGTATCATCACACTGAAAGCTGCGGTGCTAAAGAGAGCGGAGTTTATATTACATCCAGCAGCACCCTACTGAAGCCCTACTTCATGCCCAGCCGGGACTACTACAGCCTGGGCACTGGAATGCCGGTGTGGGGGGTGCGGTCGGTGCACTACGGAGAGGAGTTAGTGCGCGTGACTTTGCACAGTAGCTTTGATAACTATGAGGACATCGTGCGTTTATATGAGACGGTCCTGCAGAAGAGGGCGGAGGAGCAGAAACCGGGCTTTTGCTGGTTTACTCTGCTTGCAGAACAAGGGTTTAGCCTGCAGTTGGCCATCAAGCAGCTCTCGCCGGGGGTCCGCGTGGAGCCTTGCCAATCCGCCGTGCTGCAGTTTAGAGTGCGAGAGATCGGACAGCTTGTCCCCTTGCTGCCTAACACCTGCTCGCCTATCAGTGCTACCCGATGGCACACTGAAGACCTGGACGGGAACAAGATCCTCTTTCAGGTGAAACCTCCAGCTCAGCCCCAGGCCTCCCACACCTCGGCTTTCCCCCTGAGTGGCGCCAGTCTTCCCTCCAGAATTCGGCTGCGGAGCTCCGGTGCCTCCAGACCCTCCACATCTCCCTGCAGGACACCATCTCATATGAAGGAGCAGATGACGGGACGCTCTTGTGTGGATCTGCTGGAGCCCCGTGTGCTGAGATCGGGGACGTGTGGAGGAGAGAGTATGGGTTCAGACGGGGCGGGCAGCACTCCTCCGGGAAGCTCCTGTTACTCGTCCCAGCGCAGTAGCCCTGCAGGCCTGTCCGCTAGCTGGTATGAGCCAATGATGGCCTCTGAATCCTCCATACCCTGCCTCttgctggaggaggaggaggaggattcGGAGACTAATGTGGACACGGGCTGTGCCGTACACACACAGTCCGCTCTGGTGACTCTGAGTAGAGACCTGAGACACGGCCTGGAGGAGGCAGAAAACTCAACAAGTATTTTAACAGAAACACAGAACTCACAGAGCCGCCGTCTGCATGCTCAAGTAGATGAGTTCTTCATTTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000126253

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018865 lncRNA upstream 77684 1693197 ~ 1718629 (+) False XLOC_008232
TCONS_00018866 lncRNA upstream 77684 1715361 ~ 1718629 (+) False XLOC_008232
TCONS_00018867 lncRNA upstream 77684 1715754 ~ 1718629 (+) True XLOC_008232
TCONS_00016601 lncRNA upstream 128095 1661092 ~ 1668218 (+) True XLOC_008231
TCONS_00018749 lncRNA upstream 561620 1221817 ~ 1234693 (+) True XLOC_008225
TCONS_00016615 lncRNA downstream 619801 2421835 ~ 2423611 (+) True XLOC_008240
TCONS_00018868 lncRNA downstream 1012036 2814070 ~ 2815714 (+) True XLOC_008247
TCONS_00018750 lncRNA downstream 1042778 2844812 ~ 2855629 (+) True XLOC_008248
TCONS_00018751 lncRNA downstream 1063590 2865624 ~ 2865929 (+) True XLOC_008250
TCONS_00018869 lncRNA downstream 1084666 2886700 ~ 2887498 (+) True XLOC_008249
TCONS_00016603 mRNA upstream 682 1765988 ~ 1795631 (+) False XLOC_008234
TCONS_00016604 mRNA upstream 12348 1766734 ~ 1783965 (+) True XLOC_008234
TCONS_00016602 mRNA upstream 84841 1705167 ~ 1711472 (+) True XLOC_008233
TCONS_00016600 mRNA upstream 123852 1653779 ~ 1672461 (+) False XLOC_008231
TCONS_00016596 mRNA upstream 223184 1534644 ~ 1573129 (+) False XLOC_008228
TCONS_00016607 mRNA downstream 89655 1891689 ~ 1898233 (+) False XLOC_008237
TCONS_00016608 mRNA downstream 89658 1891692 ~ 1897728 (+) True XLOC_008237
TCONS_00016609 mRNA downstream 388195 2190229 ~ 2415435 (+) False XLOC_008238
TCONS_00016610 mRNA downstream 389866 2191900 ~ 2414403 (+) True XLOC_008238
TCONS_00016612 mRNA downstream 619398 2421432 ~ 2470804 (+) False XLOC_008240
TCONS_00016599 other upstream 227971 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016598 other upstream 252370 1543857 ~ 1543943 (+) True XLOC_008230
TCONS_00016597 other upstream 252545 1543686 ~ 1543768 (+) True XLOC_008229
TCONS_00016581 other upstream 717209 1078989 ~ 1079104 (+) True XLOC_008218
TCONS_00016606 other downstream 71624 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016611 other downstream 556477 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016622 other downstream 871901 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016623 other downstream 883021 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016634 other downstream 1704275 3506309 ~ 3506423 (+) True XLOC_008259

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000091_00457499_00460775.mRNA True 3342 mRNA 0.45 4 CI01000091 457499 ~ 462653 (+)