XLOC_008238 (rsrc1)


Basic Information

Item Value
gene id XLOC_008238
gene name rsrc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2190229 ~ 2415435 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016609
CAACAAACCTCAAACGCGTAAATCAACAAGGCATCAGAAAAGATCCCGCGACCGTGTGTTATGTGACGACCTTGTCGTTGAGAACCGGAAAATAAGTATTTCAAGCTTTATCTTTCGGTATCACGAGAAGCTGAGAGCGCCCTACTATTATGTTTGATTAGTGATGCCTGCTGGCTCCGCATCCATCGATGATCTCCAACTCGGCTACTTCAGTCTGTTCATCGGCTCATGGCGCTGCTCTGTGAGTTGCTGTTGTGATACAAAAGGACTGTGTATCGTTTTATAGCGAGCAATGGGTCGTCACTCGTCAGACAGCGAGGACACCAGCCGgagcaggaggaagaggagacaGAGACAACGCTCTTCATCCTCCAGCTCTGAAAGCAGAGTGACCAGCCGCAGCAAACACTCCAAGAGACGAACACGCTCCCGATCCAGAGACCGAAACAGAACCACAGATAGAAGACACAGAAATCGTTCCCACAGCAGCTCTTCCAGAGGATCCGGTCACAGGAGGCGAAGCCGAAGCGCAGATAGAGGACGAAGCCATCGCTCCCACAGATCCCGATCCCGCAGCCGAAACAGGAGGTCTCGATCCCGCCACCGAAGGTCTCGCAGTTGCAGCAGTGGACGATCCAGCAGGAAACGCAGCAGAGAGCGAGACCGTGGCCAGCGCAGGACTCGGGACAAAGACAGGACACGAGACAGAACTAAAGACAAAGACACGGATAAAGCCAAGGAGAAGGACAAACAAAGGGAAACAGGAAACATCAAAGCCGGATCAGAACATCTGACCTCTGCAGAACAGACCAAAGCGCGGCTCCAGGTGCTTCAAACTGCAGCTAAAACTGATGACGCACAGAAAACAAAGGAAAATGTGAAAGTAGGAGGAGCAATAAAGGAGGAAGAGGAAGTTTCTCTCGCGGAGCAGGTGAGGAGGATAAAGGATATCGAGGCCATCGAGAGCGACTCTTTTGTTCCTCAGGCTTTCAAATCATCCCGGGACGCCAGCAAGgtGACTGAATGTCCTGAAATAAAGACAGAGGCAGAGACTGTGAAGGTGGAAGTCAGCGTTCTGCCCACCTCCATCACTTACAATGACAGCGACACCCTGGCCCACCCTAATCTGTTTGTGGATAAAGAGGAGGCTGAGAGGTTGTGGTTGAACAGACTGATCTCTCTACGTCAGGAGAGGCTCATGGGTAGTCCCGTATCCTGACCACAACTGTCAGACGGATGAAGATGCGGATTTCGCGTTTGCTTTTTGTAATTTTGATCTCAATAAAGGTGCGACTGCTCCACCTGCTGGTGTCTATGGGAAGGTGAAGCTTATTGGGCACACTGTAAAGACTATGCGAGATtctcaagtgttttctgtttatttccggttgtgaaatgcattatgggatgttgatctctgctctgtccacttttgatgttgaaaattcaagtgacttttattgacattttagttgtttggaATAACAATTTATAAGAAATATTacctagagaaataagtctgtacaATAACAGAAAGTGTGCtgcagcttattacaaggttttgtagtgtaatatacaacaccaacccagagaATGTCGCTCTGCACACTATTAAACATGTTCATTAAAGTCACGACTTCCAACTTTTCAACGTCAAAAGCCTCACAAtgaattcaaaaacataaataaatggaaaaaacacGAAtaacaaccctgctgaaaaatccagcttaaaccagcctaggctggtttaagctgtttttttagtaGGGAAAATACAGAAGACTGTCCATATAGAGATACTTGTGCAGTGGACTGTGTAAGGATAAAGTTTTTAgaatttaactacaatatttttatctatttgttCTTCCATTTTTAGCGACAGCCTTCTGAACTGTTAGAAATCTCTGTAAATTGGCagtgtttttttgtatgtttttgttttgttgtcatgtttttatttgatagtttCCCCATTACGGGAGCTTGATTTTTCTTCCAATCATTTTAAACCTTGAAAAGTTGTAAAATGGGACTTTTATTAACaattgtaatagtttaaagtgatatattgtctgggttggtgttgtatagtCACTATAAAAACTGCCAGcacatttactgttatttaacagatatttcacaccactaaaaatgtcaataaaagtcactttgttaaactgtagagtagaattatcaacatcaaaagtggacatcctgctgaaaaatccagcttaatccagcctaggctggttttagctggtcgaccaggctggttttagaggggttttggccacttccaggctggtttccagccatttccagcctggtcttagctggtcaggctgggagatgaccagctaaaatcagcttgaccagcctagccaggctgagagcccagctaaaaccagcttgaccagcctggtttaagctggtcaagctggttttagctggtcatctcccagcctgaccagctaagaccaggctggaaatggctggaaaccagcctggaagtggccaaaacccctctaaaaccagcctggtcgcccagctaaaaccagccaaccagcctaggctggtttaaactgttttttttatcagaagggcagagcagagatcaacatcccataatgcaattcacaaccggaAATAAATACAAAACGCTTGTAAATCGCCAAATACGGAAACTGTTGAGAGATGttgtttacagtgtagtcaaCATGAACGGCTGATGTTCTTAATGTGTGTTTAttgcttttttctgttttaaaaaataaacaatcttcTTGTTA
>TCONS_00016610
AGCGAGCAATGGGTCGTCACTCGTCAGACAGCGAGGACACCAGCCGgagcaggaggaagaggagacaGAGACAACGCTCTTCATCCTCCAGCTCTGAAAGCAGAGTGACCAGCCGCAGCAAACACTCCAAGAGACGAACACGCTCCCGATCCAGAGACCGAAACAGAACCACAGATAGAAGACACAGAAATCGTTCCCACAGCAGCTCTTCCAGAGGATCCGGTCACAGGAGGCGAAGCCGAAGCGCAGATAGAGGACGAAGCCATCGCTCCCACAGATCCCGATCCCGCAGCCGAAACAGGAGGTCTCGATCCCGCCACCGAAGGTCTCGCAGTTGCAGCAGTGGACGATCCAGCAGGAAACGCAGCAGAGAGCGAGACCGTGGCCAGCGCAGGACTCGGGACAAAGACAGGACACGAGACAGAACTAAAGACAAAGACACGGATAAAGCCAAGGAGAAGGACAAACAAAGGGAAACAGGAAACATCAAAGCCGGATCAGAACATCTGACCTCTGCAGAACAGACCAAAGCGCGGCTCCAGGTGCTTCAAACTGCAGCTAAAACTGATGACGCACAGAAAACAAAGGAAAATGTGAAAGTAGGAGGAGCAATAAAGGAGGAAGAGGAAGTTTCTCTCGCGGAGCAGGTGAGGAGGATAAAGGATATCGAGGCCATCGAGAGCGACTCTTTTGTTCCTCAGGCTTTCAAATCATCCCGGGACGCCAGCAAGgtGACTGAATGTCCTGAAATAAAGACAGAGGCAGAGACTGTGAAGGTGGAAGTCAGCGTTCTGCCCACCTCCATCACTTACAATGACAGCGACACCCTGGCCCACCCTAATCTGTTTGTGGATAAAGAGGAGGCTGAGAGGTTGTGGTTGAACAGACTGATCTCTCTACGTCAGGAGAGGCTCATGGGTAGTCCCGTATCCTGACCACAACTGTCAGACGGATGAAGATGCGGATTTCGCGTTTGCTTTTTGTAATTTTGATCTCAATAAAGGTGCGACTGCTCCACCTGCTGGTGTCTATGGGAAGGTGAAGCTTATTGGGCACACTGTAAAGACTATGCGAGATtctcaagtgttttctgtttatttccggttgtgaaatgcattatgggatgttgatctctgctctgtccacttttgatgttgaaaattcaagtgacttttattgacattttagttgtttggaATAACAATTTATAAGAAATATTacctagagaaataagtctgtacaATAACAGAAAGTGTGCtgcagcttattacaaggttttgtagtgtaatatacaacaccaacccagagaATGTCGCTCTGCACACTATTAAACATGTTCATTAAAGTCACGACTTCCAACTTTTCAACGTCAAAAGCCTCACAAtgaattcaaaaacataaataaatggaaaaaacacGAAtaacaaccctgctgaaaaatccagcttaaaccagcctaggctggtttaagctgttttt

Function

symbol description
rsrc1 Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human RSRC1 (arginine and serine rich coiled-coil 1).

GO:

id name namespace
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-2374 Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human RSRC1 (arginine and serine rich coiled-coil 1).

Ensembl:

ensembl_id ENSDARG00000033987

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016609 False 2795 mRNA 0.44 10 2190229 2415435
TCONS_00016610 True 1479 mRNA 0.48 9 2191900 2414403

Neighbor

gene id symbol gene type direction distance location
XLOC_008237 sbds coding upstream 291996 1891689 ~ 1898233 (+)
XLOC_008236 CU638704.1 coding upstream 316451 1873658 ~ 1873778 (+)
XLOC_008235 fam124b coding upstream 388195 1796313 ~ 1802034 (+)
XLOC_008234 cul3b coding upstream 394598 1765988 ~ 1795631 (+)
XLOC_008232 NA coding upstream 471600 1693197 ~ 1718629 (+)
XLOC_008240 hephl1a coding downstream 5997 2421432 ~ 2472933 (+)
XLOC_008241 panx1a coding downstream 60459 2475894 ~ 2489934 (+)
XLOC_008242 wdr53 coding downstream 83061 2498496 ~ 2507988 (+)
XLOC_008243 cux1b coding downstream 104884 2520319 ~ 2543834 (+)
XLOC_008244 SH2B2 coding downstream 144440 2559875 ~ 2578139 (+)
XLOC_008463 BX663520.1 misc downstream 18836756 21252191 ~ 21252282 (+)
XLOC_008230 dre-mir-16a non-coding upstream 646286 1543857 ~ 1543943 (+)
XLOC_008229 dre-mir-15c non-coding upstream 646461 1543686 ~ 1543768 (+)
XLOC_008225 NA non-coding upstream 955536 1221817 ~ 1234693 (+)
XLOC_008245 CR382327.2 non-coding downstream 258500 2673935 ~ 2674590 (+)
XLOC_008246 CR382327.3 non-coding downstream 269620 2685055 ~ 2685706 (+)
XLOC_008247 NA non-coding downstream 398635 2814070 ~ 2815714 (+)
XLOC_008248 NA non-coding downstream 429377 2844812 ~ 2855629 (+)
XLOC_008250 NA non-coding downstream 450189 2865624 ~ 2865929 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000091_00797527_00799745 RSRC1 coding CI01000091 null 797527 ~ 799745 (-)