XLOC_008225


Basic Information

Item Value
gene id XLOC_008225
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1221817 ~ 1234693 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018749
agcaGCGGCGCAGGACGCTCCTGGATCCGGCGCGCGTGGAGGTGAAGCGGTGAtgtcatgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgtctgTCAGGACTGAAGCTGCTGCTGAACGCTCTCTCTCACCATCTCTCAGGTCTGGTCATCTCAGCTGTGTTGAGGAGCCACAACAACCAACGCTGGACGGTGTGGAGGTCTGAGCTCAGCTGACTGGTGAAAACACACAGGTGTGATCAGCAGAGATGGAGTCGCCCACTGACCTGAGGACAGCACACACTGAGGTCAGATCTGCTGGCCTGACGCCCGGCTCTCTAATTACTGCTTCATTAGCTGAATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018749 True 363 lncRNA 0.55 3 1221817 1234693

Neighbor

gene id symbol gene type direction distance location
XLOC_008224 mfsd1 coding upstream 1694 1199407 ~ 1220123 (+)
XLOC_008223 gfm1 coding upstream 26805 1167119 ~ 1195012 (+)
XLOC_008222 mlf1 coding upstream 59159 1148074 ~ 1162658 (+)
XLOC_008221 p2ry13 coding upstream 79154 1134870 ~ 1142663 (+)
XLOC_008220 p2ry12 coding upstream 101396 1116664 ~ 1120421 (+)
XLOC_008226 schip1 coding downstream 137650 1372343 ~ 1436707 (+)
XLOC_008227 il12a coding downstream 205671 1440364 ~ 1448705 (+)
XLOC_008228 smc4 coding downstream 299951 1534644 ~ 1573129 (+)
XLOC_008229 dre-mir-15c coding downstream 308993 1543686 ~ 1543768 (+)
XLOC_008230 dre-mir-16a coding downstream 309164 1543857 ~ 1543943 (+)
XLOC_008463 BX663520.1 misc downstream 20017498 21252191 ~ 21252282 (+)
XLOC_008218 CU571333.1 non-coding upstream 142713 1078989 ~ 1079104 (+)
XLOC_008206 NA non-coding upstream 453382 768181 ~ 768435 (+)
XLOC_008204 NA non-coding upstream 552373 658362 ~ 669444 (+)
XLOC_008200 NA non-coding upstream 673936 546153 ~ 547881 (+)
XLOC_008197 NA non-coding upstream 721994 497208 ~ 499823 (+)
XLOC_008232 NA non-coding downstream 458504 1693197 ~ 1718629 (+)
XLOC_008236 CU638704.1 non-coding downstream 638965 1873658 ~ 1873778 (+)
XLOC_008239 CU695208.1 non-coding downstream 1123818 2358511 ~ 2358625 (+)

Expression


Co-expression Network