XLOC_008222 (mlf1)


Basic Information

Item Value
gene id XLOC_008222
gene name mlf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1148074 ~ 1162658 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016588
AGAAGAGCCGAGATCCTGAGTCCGTCAGCATGTTCAACTTCAGACAGCTCGAGGAAGACCCTTTCTTCGCCTCATCAAGGTATGCACGTCATGTCCTCAGTGTCCAAGCCTGACACAGACTGAATGGGGAGATGGACAACACTCAcaaaCGACCCCTTCAGGCTGCATCACGAGCGCATGCGGCAGATGATGGGGGGGTTTTCTGACCCTTTCGCTCAGAGCTTCATGCCCAGCATCACAGATGTCCACCAGCGGGGTCACAGACATCCTAACACCGGCCCACGCCAGCGCAGTGACCGAGAGCTGGACTTCTTTGCCAATCCTTTCTCTATGATGGAAAGCATGAGGAACCGGATGGAGGCGATGCACAGACATACTGTAAGTCTGATCTC
>TCONS_00016589
AGAAGAGCCGAGATCCTGAGTCCGTCAGCATGTTCAACTTCAGACAGCTCGAGGAAGACCCTTTCTTCGCCGACCCCTTCAGGCTGCATCACGAGCGCATGCGGCAGATGATGGGGGGGTTTTCTGACCCTTTCGCTCAGAGCTTCATGCCCAGCATCACAGATGTCCACCAGCGGGGTCACAGACATCCTAACACCGGCCCACGCCAGCGCAGTGACCGAGAGCTGGACTTCTTTGCCAATCCTTTCTCTATGATGGAAAGCATGAGGAACCGGATGGAGGCGATGCACAGACATACTGACAGCATGTCATCTCCAGACTCCAACAGCcactccttctcctcctcctctgtcATGACCTACTCGAAAGTAGGAGACGAGCCGGCAAAAGTGTTCGCAGCCTCGTCTCAGACGCGCTGTGCTCCTGGAGGAATAAAGGAGACCAAGAAGTCTCTGCGGGACTCTGAGAGTGGACTCCAGAAGATGTCCATCGGCCATCACATCCAGGACAGAGGACACGTCATCGAGAGGAAGGAGAACAGGAAGACTGGAGAGAAAGAGTTCAACCAGGACTTCCAGAACATGGACGAAACCGAGGCGCAGGCCTTTGATCAGGAATGGCAGCAGGAGGTGTCCAGATTCCAGGTTTCTGCACCCACGGCCCGTTTAGAGGCTCCGAAACACAGAACTGTGCACCGAGCGGCCATCACAgcaccacaacacacacacagAGACTCCAGAGCAGCTGAAGGAAATCAAAAGCTCCACATGACAGGCTCCAGCGTCAAGAAGCACTAAAGCTCCTTCAGAATAAAACACTGCTGACCTCTTACCGCAGCGTCCTCATCATCTGACCTGCTCATGTCTGACTCACATCACAAACTCCAGCAGTGCATCGCCAGCAGAAACTCTCTTCCCTTCAGGATTATTTCATTCGGAGAGTTATTTCTACAGGAGTACACTTTTATACCACTGAGCTATAAATATTTGTCTATACTGTGCAGTCTGTGCTTTTCCTTTCAAACCCTAATAGTGTTGTCATCAtcatgcactgtcactttaatcaCTAGAAGACTCTGCTGATGTGCTGCTTCTGATCATCTCATCTGTACCTGTACACTGATAAACAGTCCacacagggatagttcacctcgAAAATGAACATTGCCTGTTAAATTGACATTTTTCCCACAGTAGAACATTAAAGGGCCaggacccccccccccaccccctgtctcagcagggtgttttgacacctctagtttggaaaaggTCATTCAaatgggcgtgtccagctctgtttataTGGGAGTGTAATTCACACGTgtgtccagctgcgctctcatagcggggaagtgaaaacaaaaccttcactgcagcacattaataaacgcaacactgacgactcatatctc
>TCONS_00016590
ATGTTCAACTTCAGACAGCTCGAGGAAGACCCTTTCTTCGCCTCATCAAGCGACCCCTTCAGGCTGCATCACGAGCGCATGCGGCAGATGATGGGGGGGTTTTCTGACCCTTTCGCTCAGAGCTTCATGCCCAGCATCACAGATGTCCACCAGCGGGGTCACAGACATCCTAACACCGGCCCACGCCAGCGCAGTGACCGAGAGCTGGACTTCTTTGCCAATCCTTTCTCTATGATGGAAAGCATGAGGAACCGGATGGAGGCGATGCACAGACATACTGACAGCATGTCATCTCCAGACTCCAACAGCcactccttctcctcctcctctgtcATGACCTACTCGAAAGTAGGAGACGAGCCGGCAAAAGTGTTCGCAGCCTCGTCTCAGACGCGCTGTGCTCCTGGAGGAATAAAGGAGACCAAGAAGTCTCTGCGGGACTCTGAGAGTGGACTCCAGAAGATGTCCATCGGCCATCACATCCAGGACAGAGGACACGTCATCGAGAGGAAGGAGAACAGGAAGACTGGAGAGAAAGAGTTCAACCAGGACTTCCAGAACATGGACGAAACCGAGGCGCAGGCCTTTGATCAGGAATGGCAGCAGGAGGTGTCCAGATTCCAGGTTTCTGCACCCACGGCCCGTTTAGAGGCTCCGAAACACAGAACTGTGCACCGAGCGGCCATCACAgcaccacaacacacacacagAGACTCCAGAGCAGCTGAAGGAAATCAAAAGCTCCACATGACAGGCTCCAGCGTCAAGAAGCACTAA

Function

symbol description
mlf1 Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; mesoderm; musculature system; and sensory system. Orthologous to human MLF1 (myeloid leukemia factor 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko05202 Transcriptional misregulation in cancer

ZFIN:

id description
ZDB-GENE-080917-7 Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; mesoderm; musculature system; and sensory system. Orthologous to human MLF1 (myeloid leukemia factor 1).

Ensembl:

ensembl_id ENSDARG00000077301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016588 False 392 mRNA 0.54 4 1148074 1157671
TCONS_00016589 False 1414 mRNA 0.51 7 1148074 1162658
TCONS_00016590 True 777 mRNA 0.55 8 1148103 1162041

Neighbor

gene id symbol gene type direction distance location
XLOC_008221 p2ry13 coding upstream 5411 1134870 ~ 1142663 (+)
XLOC_008220 p2ry12 coding upstream 27653 1116664 ~ 1120421 (+)
XLOC_008219 igsf10 coding upstream 40966 1086656 ~ 1107108 (+)
XLOC_008218 CU571333.1 coding upstream 68970 1078989 ~ 1079104 (+)
XLOC_008217 znf1007 coding upstream 154641 983741 ~ 993433 (+)
XLOC_008223 gfm1 coding downstream 4461 1167119 ~ 1195012 (+)
XLOC_008224 mfsd1 coding downstream 36749 1199407 ~ 1220123 (+)
XLOC_008225 NA coding downstream 59159 1221817 ~ 1234693 (+)
XLOC_008226 schip1 coding downstream 209685 1372343 ~ 1436707 (+)
XLOC_008227 il12a coding downstream 277706 1440364 ~ 1448705 (+)
XLOC_008463 BX663520.1 misc downstream 20089533 21252191 ~ 21252282 (+)
XLOC_008206 NA non-coding upstream 379639 768181 ~ 768435 (+)
XLOC_008204 NA non-coding upstream 478630 658362 ~ 669444 (+)
XLOC_008200 NA non-coding upstream 600193 546153 ~ 547881 (+)
XLOC_008197 NA non-coding upstream 648251 497208 ~ 499823 (+)
XLOC_008229 dre-mir-15c non-coding downstream 381028 1543686 ~ 1543768 (+)
XLOC_008230 dre-mir-16a non-coding downstream 381199 1543857 ~ 1543943 (+)
XLOC_008232 NA non-coding downstream 530539 1693197 ~ 1718629 (+)
XLOC_008236 CU638704.1 non-coding downstream 711000 1873658 ~ 1873778 (+)

Expression


Co-expression Network