RNA id: TCONS_00016590


Basic Information

Item Value
RNA id TCONS_00016590
length 777
RNA type mRNA
GC content 0.55
exon number 8
gene id XLOC_008222
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1148074 ~ 1162658 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTCAACTTCAGACAGCTCGAGGAAGACCCTTTCTTCGCCTCATCAAGCGACCCCTTCAGGCTGCATCACGAGCGCATGCGGCAGATGATGGGGGGGTTTTCTGACCCTTTCGCTCAGAGCTTCATGCCCAGCATCACAGATGTCCACCAGCGGGGTCACAGACATCCTAACACCGGCCCACGCCAGCGCAGTGACCGAGAGCTGGACTTCTTTGCCAATCCTTTCTCTATGATGGAAAGCATGAGGAACCGGATGGAGGCGATGCACAGACATACTGACAGCATGTCATCTCCAGACTCCAACAGCcactccttctcctcctcctctgtcATGACCTACTCGAAAGTAGGAGACGAGCCGGCAAAAGTGTTCGCAGCCTCGTCTCAGACGCGCTGTGCTCCTGGAGGAATAAAGGAGACCAAGAAGTCTCTGCGGGACTCTGAGAGTGGACTCCAGAAGATGTCCATCGGCCATCACATCCAGGACAGAGGACACGTCATCGAGAGGAAGGAGAACAGGAAGACTGGAGAGAAAGAGTTCAACCAGGACTTCCAGAACATGGACGAAACCGAGGCGCAGGCCTTTGATCAGGAATGGCAGCAGGAGGTGTCCAGATTCCAGGTTTCTGCACCCACGGCCCGTTTAGAGGCTCCGAAACACAGAACTGTGCACCGAGCGGCCATCACAgcaccacaacacacacacagAGACTCCAGAGCAGCTGAAGGAAATCAAAAGCTCCACATGACAGGCTCCAGCGTCAAGAAGCACTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko05202 Transcriptional misregulation in cancer

ZFIN:

id description
ZDB-GENE-080917-7 Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; mesoderm; musculature system; and sensory system. Orthologous to human MLF1 (myeloid leukemia factor 1).

Ensembl:

ensembl_id ENSDART00000188011

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018745 lncRNA upstream 321128 823442 ~ 826975 (+) True XLOC_008210
TCONS_00018744 lncRNA upstream 379668 768181 ~ 768435 (+) True XLOC_008206
TCONS_00018864 lncRNA upstream 478659 658362 ~ 669444 (+) True XLOC_008204
TCONS_00018863 lncRNA upstream 600222 546153 ~ 547881 (+) True XLOC_008200
TCONS_00018862 lncRNA upstream 648280 497208 ~ 499823 (+) True XLOC_008197
TCONS_00018746 lncRNA downstream 45679 1207720 ~ 1211561 (+) False XLOC_008224
TCONS_00018748 lncRNA downstream 45679 1207720 ~ 1220123 (+) False XLOC_008224
TCONS_00018747 lncRNA downstream 45679 1207720 ~ 1220123 (+) True XLOC_008224
TCONS_00018749 lncRNA downstream 59776 1221817 ~ 1234693 (+) True XLOC_008225
TCONS_00016601 lncRNA downstream 499051 1661092 ~ 1668218 (+) True XLOC_008231
TCONS_00016586 mRNA upstream 5440 1134870 ~ 1142663 (+) False XLOC_008221
TCONS_00016587 mRNA upstream 7269 1137337 ~ 1140834 (+) True XLOC_008221
TCONS_00016584 mRNA upstream 27682 1116664 ~ 1120421 (+) False XLOC_008220
TCONS_00016585 mRNA upstream 27682 1119114 ~ 1120421 (+) True XLOC_008220
TCONS_00016583 mRNA upstream 40995 1086656 ~ 1107108 (+) True XLOC_008219
TCONS_00016591 mRNA downstream 5078 1167119 ~ 1195012 (+) True XLOC_008223
TCONS_00016592 mRNA downstream 37366 1199407 ~ 1210546 (+) False XLOC_008224
TCONS_00016593 mRNA downstream 210302 1372343 ~ 1436707 (+) False XLOC_008226
TCONS_00016594 mRNA downstream 235770 1397811 ~ 1436707 (+) True XLOC_008226
TCONS_00016595 mRNA downstream 278323 1440364 ~ 1448705 (+) True XLOC_008227
TCONS_00016581 other upstream 68999 1078989 ~ 1079104 (+) True XLOC_008218
TCONS_00016597 other downstream 381645 1543686 ~ 1543768 (+) True XLOC_008229
TCONS_00016598 other downstream 381816 1543857 ~ 1543943 (+) True XLOC_008230
TCONS_00016599 other downstream 398624 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016606 other downstream 711617 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016611 other downstream 1196470 2358511 ~ 2358625 (+) True XLOC_008239

Expression Profile

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