XLOC_008224 (mfsd1)


Basic Information

Item Value
gene id XLOC_008224
gene name mfsd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1199407 ~ 1220123 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016592
ATGGCTGACAGAGAGGAGCACCAGGGTCTGCTGGATGGAGATAAAGATGAAGATGAGGGTGATAAAGCGCCGTCCGCACACCTCAACCCTATCTGTGACCCCAACCACCTGCTGCACCGCATCCTGGTGCTCATCTTCATGTGCTTCCTGGGCTTCGGTAGTTATTTTTGTTATgatatttgcaacccatatcaaacacacctgaaccaggacatgaatCTGAACACGGCCTCCTTCATGCAGCTGTACGCCTGGTACTCCTGGCCCAATGTGGTCCTGTGCTTCCTGGGCGGATTCCTGCTGGACCGAGTGTTCGGCATCAGGCTGGGGACTGTGATCTTCTCCTTGTTTGTGTTAGTAGGGCAGATCATATTCGCCGCCGGCGCTCTGGCCAATCACTTCTGGCTGATGAACGTGGGCCGCTTTGTGTTCGGGATCGGTGGCGAGTCTCTGGCTGTGGCTCAGAACACGTATGCGGTCAACTGGTTTAAAGGGAAAGAGCTCAACCTGGTGTTCGGCCTGCAGCTCAGCATGGCCAGACTGGGCAGCACGGTCAACATGAATGTGATTGGTTGGGTGTACGGCCGTATTCAGATGAGCATGGGCTCTGCAGGACCCACTACACTCGGGATAACACTCATGATCGCGGCGTCCACGTGTCTCTTCTCTCTCATCTGCGCTCTGGTTTTGGGCTTTCTGGACAAACGGGCTGAGAGGATCCTCAATAAAGAGCAGGGCAAAACTGgtGAAGTCATCAAGCTGACGGACGTCAAGGACTTCTCGGTCTCCCTCTGGCTGATCTTCATCATCTGTGTGGCGTATTATGTGAGGATTTTTATCAGCATAGGAATTATGAAAGTCATGCTgggaaatcaaaatgtacatatAAAAGTAGTGCAGGAAGcctttcagtgtgtttgtgttgaaAATACAGGAGAGCTGACTTCGCTTGCTGGATTCACAGTCAAATCTAATAATGAACAGATACTTATCGTTCGTCTGTGTGGACACacatattcatccattcattctttattttcttttcagcttagtccctttattaaccaggggtcacacaatttagcttactcaattcacctgtaccgcatgtctttggacttttggtggaaaccggagcaccaggaggaaaccctctcaaacacCATGCAGTCCATCCAGAATCTGGGTCTGGCCGTGATGTCCATCGCTGCCGGGAGTATACTGGACGTCAGAGGATATCTCTTCCTGGAGGTCTTCTTCATCGCCTGCCTGTGCATGGCTCTGCTGGCAGTGGTCTTGCTGTATCTCTTCGATTATTACAAAGAGGGAGGACTGAACCTGTCAGCCGCCACACGATCCAAAAGAGCCAAACCTGAGTGA
>TCONS_00018746
CCTAGGTGTGTCTTACTCTCTGCTGGCCTGCGCTCTGTGGCCCATGGTGGCGTTTGTGGTGCCGGAGCATCAGCTGGGGACGGCCTACGGATTCATGCAGTCCATCCAGAATCTGGGTCTGGCCGTGATGTCCATCGCTGCCGGGAGTATACTGGACGTCAGAGGATATCTCTTCCTGGAGGTCTTCTTCATCGCCTGCCTGTGCATGGCTCTGCTGGCAGTGGTCTTGCTGTATCTCTTCGATTATTACAAAGAGGGAGGACTGAACCTGTCAGCCGCCACACGATCCAAAAGAGCCAAACCTGAGTGA
>TCONS_00018748
CCTAGGTGTGTCTTACTCTCTGCTGGCCTGCGCTCTGTGGCCCATGGTGGCGTTTGTGGTGCCGGAGCATCAGCTGGGGACGGCCTACGGATTCATGCAGTCCATCCAGAATCTGGGTCTGGCCGTGATGTCCATCGCTGCCGGGAGTATACTGGACGTCAGAGGATATCTCTTCCTGGAGGTCTTCTTCATCGCCTGCCTGTGCATGGCTCTGCTGGCAGTGGTCTTGCTGTATCTCTTCGATTATTACAAAGAGGGAGGACTGAACCTGTCAGCCGCCACACGATCCAAAAGAGCCAAACCTGAGGATGTGCAGCGTCTGCGTGCTCCTCGTCAATCTGTGGGTGATCAAGATCATCTGAAGCCTCTCTCTCCGTTCGGGGTCAGAAACCGCTACCTGTCCAGACTGGGGgtgcaggtaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagttgaagtctgaattattcaccctcctgtataTGTcccccttaatttctgtttactgagagatttcttcaactcatcttaaagtgacatgtaaaggcttcactagggtaattagggtaaagttagggtaattaggcaagtcattgtataacagtggttctgAAGActatccaacactaatattgctgaaggggcgaataatattgaccttaaaatggctttaaaactaatcaaaactgctttttttctagcccaaataaaacaaatcagactttctccagaagaacaaatattagaggaaatactgtgaacaattcctgaaactgctcaacatcatttgggaaagattgggaaaacaaaaaaatcgcaggagggcgaataatgctgactttaactatatacacttaccggccactttattaggtacacactggcaccgggttggaccccttttgccctCAGACCTGTCACAATCTCacactgttgatgtcagtttgagccTTCAGAAACAATATTCCAAGCCCCGCCCCTTTCACTGTTAGTGTGCTCTGAGGGAATGATGAGgaaaaataaagccccgccccctactcaatattcagtttcagctggaaGCACGTCAACAAACTCAAAAGGTCAAAATGTCTTAGAAACTTCTGTTTAATGCAGGCTTGTGTGTTATGATGCAGATCTCTTCTTTGAGGTGTTGTtttcctgtgtctgtgtgtgtctgcatgtgtgtgtgtgtgtgtgtgttgacagaTGCCGGGTCACTGCTGTCCTCATCTGTCTTCATTGGCCTACAGGAGTGTCCTGAAATGAGCTTGACGCTTCATAACCTGACCGCTAATGCTGGCTGAAAtctgaatatttatattaataaatgtttatttttgcactAATTTGGAggcttttctttgttttaaagtAGAAAAAAGCTGTGTTTAGTCTATTCAGAGTTATAGACACACTGAGAGATGCTACGGACGCTTCAGTCGAGACAAAACTGATGAACACTTCAACTAAACAGTGACAATTAgcttttagaagatataaacatctaaagTTTGCAGATTGTCGTTTCCGCctaagttctagtaaactgaagcagtgtcagtccagtttacaGAGCTGTAGTTCAGTTGAGTGTGTTTTAATTTCCCCGCTGacacactgaagagcaaatccatcaatgcgcagatCCACAAGTCCCaagccaagcaagccagtggcagcA
>TCONS_00018747
CCTAGGTGTGTCTTACTCTCTGCTGGCCTGCGCTCTGTGGCCCATGGTGGCGTTTGTGGTGCCGGAGCATCAGCTGGGGACGGCCTACGGATTCATGCAGTCCATCCAGAATCTGGGTCTGGCCGTGATGTCCATCGCTGCCGGGAGTATACTGGACGTCAGAGGATATCTCTTCCTGGAGGTCTTCTTCATCGCCTGCCTGTGCATGGCTCTGCTGGCAGTGGTCTTGCTGTATCTCTTCGATTATTACAAAGAGGGAGGACTGAACCTGTCAGCCGCCACACGATCCAAAAGAGCCAAACCTGAGGATGTGCAGCGTCTGCGTGCTCCTCGTCAATCTGTGGGTGATCAAGATCATCTGAAGCCTCTCTCTCCGTTCGGGGTCAGAAACCGCTACCTGTCCAGACTGGGGgtgcagaTGCCGGGTCACTGCTGTCCTCATCTGTCTTCATTGGCCTACAGGAGTGTCCTGAAATGAGCTTGACGCTTCATAACCTGACCGCTAATGCTGGCTGAAAtctgaatatttatattaataaatgtttatttttgcactAATTTGGAggcttttctttgttttaaagtAGAAAAAAGCTGTGTTTAGTCTATTCAGAGTTATAGACACACTGAGAGATGCTACGGACGCTTCAGTCGAGACAAAACTGATGAACACTTCAACTAAACAGTGACAATTAgcttttagaagatataaacatctaaagTTTGCAGATTGTCGTTTCCGCctaagttctagtaaactgaagcagtgtcagtccagtttacaGAGCTGTAGTTCAGTTGAGTGTGTTTTAATTTCCCCGCTGacacactgaagagcaaatccatcaatgcgcagatCCACAAGTCCCaagccaagcaagccagtggcagcA

Function

symbol description
mfsd1 Predicted to enable protein homodimerization activity. Predicted to be involved in protein localization to lysosome and protein stabilization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosome. Orthologous to human MFSD1 (major facilitator superfamily domain containing 1).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-153 Predicted to enable protein homodimerization activity. Predicted to be involved in protein localization to lysosome and protein stabilization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosome. Orthologous to human MFSD1 (major facilitator superfamily domain containing 1).

Ensembl:

ensembl_id ENSDARG00000101379

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016592 False 1380 mRNA 0.50 19 1199407 1210546
TCONS_00018746 False 310 lncRNA 0.56 5 1207720 1211561
TCONS_00018748 False 1736 lncRNA 0.45 5 1207720 1220123
TCONS_00018747 True 893 lncRNA 0.48 6 1207720 1220123

Neighbor

gene id symbol gene type direction distance location
XLOC_008223 gfm1 coding upstream 4395 1167119 ~ 1195012 (+)
XLOC_008222 mlf1 coding upstream 36749 1148074 ~ 1162658 (+)
XLOC_008221 p2ry13 coding upstream 56744 1134870 ~ 1142663 (+)
XLOC_008220 p2ry12 coding upstream 78986 1116664 ~ 1120421 (+)
XLOC_008219 igsf10 coding upstream 92299 1086656 ~ 1107108 (+)
XLOC_008225 NA coding downstream 1694 1221817 ~ 1234693 (+)
XLOC_008226 schip1 coding downstream 152220 1372343 ~ 1436707 (+)
XLOC_008227 il12a coding downstream 220241 1440364 ~ 1448705 (+)
XLOC_008228 smc4 coding downstream 314521 1534644 ~ 1573129 (+)
XLOC_008229 dre-mir-15c coding downstream 323563 1543686 ~ 1543768 (+)
XLOC_008463 BX663520.1 misc downstream 20032068 21252191 ~ 21252282 (+)
XLOC_008218 CU571333.1 non-coding upstream 120303 1078989 ~ 1079104 (+)
XLOC_008206 NA non-coding upstream 430972 768181 ~ 768435 (+)
XLOC_008204 NA non-coding upstream 529963 658362 ~ 669444 (+)
XLOC_008200 NA non-coding upstream 651526 546153 ~ 547881 (+)
XLOC_008197 NA non-coding upstream 699584 497208 ~ 499823 (+)
XLOC_008230 dre-mir-16a non-coding downstream 323734 1543857 ~ 1543943 (+)
XLOC_008232 NA non-coding downstream 473074 1693197 ~ 1718629 (+)
XLOC_008236 CU638704.1 non-coding downstream 653535 1873658 ~ 1873778 (+)

Expression


Co-expression Network