XLOC_008200


Basic Information

Item Value
gene id XLOC_008200
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 546153 ~ 547881 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018863
gatgcagcgccccctGAGGGGTCGGAGGTCACGGTTGTTCAGCTCAGGCTTGCGCTCTTGAcctttacgcactgaaactcCTCCAGACTCCTTCAGTCTTTAAtgctgttctgcactgttgaaatATCCAcatgtcttcctctctttctctgagGAGCATTGTGTTCACACACTTCACTCATTTCCTCTCCTATTTGTGgtcaaactggcgatcctctgccCATCTCTGCTCTGtgtgtgattttgtgtgtgtgtgtgtgtgttaacgcTCACCCTCCCACAGATCCACCGTCTGAAATATGTCGGTTTTGGCCACGCCGTACTGCTCGGCGGCGTTCAGGAACTGCGAGACCTGCTCCATCTGCTTAAAGGCCATGCTGGAGCTCTGGATCTTCTTCACCGGCTTCTCTTTACTCAGACTGTTGATCAGCTCGCACAACACCTGCACGGCTTGAAAGCCCAGTTTCCCGGCGTCGGGTCTCCCCACCGCTGACCCACACTGGGCCACGAGCCACTCCACCAGACGCAGCTCCAGCTCCGGGTCGTACTTCTGCTCGATCTTATCCTGCACCTGCCGGCTCAGCCCATAAGACGGCCCCTTGTTTGCCATAGTCGCTCCCTGATGGAG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0015849 organic acid transport biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0046942 carboxylic acid transport biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0015711 organic anion transport biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018863 True 628 lncRNA 0.55 2 546153 547881

Neighbor

gene id symbol gene type direction distance location
XLOC_008199 pcsk7 coding upstream 4020 518092 ~ 542133 (+)
XLOC_008198 ftr86 coding upstream 29403 509126 ~ 516750 (+)
XLOC_008197 NA coding upstream 46330 497208 ~ 499823 (+)
XLOC_008196 si:ch1073-280e3.1 coding upstream 49604 478524 ~ 496549 (+)
XLOC_008195 med17 coding upstream 100143 436776 ~ 446010 (+)
XLOC_008201 si:ch73-144d13.4 coding downstream 29817 577698 ~ 581955 (+)
XLOC_008202 si:ch211-210b2.1 coding downstream 70200 618081 ~ 637162 (+)
XLOC_008203 znf1013 coding downstream 90576 638457 ~ 643471 (+)
XLOC_008204 NA coding downstream 110481 658362 ~ 669444 (+)
XLOC_008205 si:dkey-7i4.24 coding downstream 166322 714203 ~ 721558 (+)
XLOC_008463 BX663520.1 misc downstream 20704310 21252191 ~ 21252282 (+)
XLOC_008206 NA non-coding downstream 220300 768181 ~ 768435 (+)
XLOC_008218 CU571333.1 non-coding downstream 531108 1078989 ~ 1079104 (+)
XLOC_008225 NA non-coding downstream 673936 1221817 ~ 1234693 (+)
XLOC_008229 dre-mir-15c non-coding downstream 995805 1543686 ~ 1543768 (+)

Expression


Co-expression Network