XLOC_008202 (si:ch211-210b2.1)


Basic Information

Item Value
gene id XLOC_008202
gene name si:ch211-210b2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 618081 ~ 637162 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016543
cTGTTGAAGTCGctgttatttgtgttaaatttaatacattttctcTTAACCTGCAGCCTTCAGGATCAGTGTTCACTTCAGGCCCGGCGCCATGGGTTGTTATaactgagggggcattttaaTCCCGGGGGCATtagacctggtgactgattttagtccctcttgttcctttcatttaggctatttatttattactttgcaatactgcctaagttactgactaCTGTTTTCACGATATGCGTATTTCTATGATTGTATCTTGAATCGCGTTTATTTTGTCATGGCTGTGTGACGTCATAAGTGTGCGCCACCCGCACCGCTGCGTCTTGATTTGGCTggaaaaaaAGAACAGCAGATTATTAtgaagatggcgtttattaaagaggagagtgaagacgtGACggttgaagaaacattcacagtcaaacatgaagagaCTGAAGAAGCTTTCAGTGTCAAATGTGAAGATGCTGAGGAGCAAACAGACTTTATTGTGGTGAAAGTGGAGAGTGAAGATCTGAATGAATTGGAAGAGGTGAATCCTCACGATGGCAGGACTGGAGAAAATTCACAGACTGAAAATACTCAGTCATCAAGAAGTGCTCACAACACTAAAACTGCGCATGTTTTCTGCCAGCTTTGTGGAAAGAGTTTCGTTAATAAAGGAACTCTTAAAGTGCACATGAAAATTCACTCCGGAGAGAAGCCGTACAGCTGCCAGCAGTGTGGAGCAAGTTTCCCTCGCATAGACACTTTAAAAGCCCACATGAacattcacaccggagagaaaccttacttatgccaactgtgtggaaagagtttcggtCACAAAGCATCTCTTTATATTCACAAGAGACTCCACACCGGAGAGATGCCTTATGCCTGCAAACTGTGTGGGAAATCCTTCAAACAGAAATCTAATCTTACGACACACATGAgggttcacaccggagagaagcctttcacgtgccaacagtgtggaaaatgtCTCACAAGTAAGCGGCGGCTTGATGAACACGTGCTGATGCACTTCAGAGAGAACAGCTTTAAATGCCATCAGTGTGAAATGAGTTTCTCAGACATGAACATCCTCAAGAGGCACATAACAACTCACATCGGACAGAAGCCGTTTATATGCCTGCAGTGTGGAGTGAGCTGCACAAACAAGGCAAACCTCAAgactcacatgaggatccacactggagaaaagccgttCGCCTGCCcatattgtgaaaagtgcttttCACGGAAGCGTAGTCTTCAGGATCACATGggaattcacaccggagagaagccgtacacGTGTgagcagtgtggaaagagtttcactaaCAGTGGAAGCCATCATCTCCACATGAggactcacaccggagagaagcacTTCACCTGCcagcagtgtggaaagagcttttcGCAGAACGGAACTCTTAAGGatcacatgagaatccacacgaGAGAGAAACCTCTCTAAATGTGAGCTGCTCAAACAGTCAACTCTCGACTTCTGCTGGaacttttctgtttgttttgtctaAGTTGTATGGCTGACATGCCTATGAGCATCATGACAAACTTGTCTTAGGCTGCTTTctcacctacacttttgtttcggaacgcatctcgtttgcccagttagcgcggttcgattggcatatgtgaacagggcaatcgcgctctgttccgcgccaaagtaatcgctctgagatcgcctgagtgaggtggtctcggctcgattgaaacgaaccctggagcggtttgattgcagtgagaaatcgatccgatccgagcgcggttatatcacagtgttttatggatatgtaataggcttacggctatatgaagagagaattatgagtagggcgggaagtttcgcgagtctccggatgcccgcaaacgagtgatgatctcccggtaatctcccGTCTCCCTCCCGGTACTCAAATAGGCTTTGTCGctcacccttctcacccctccccaccgcatctctcctcagacacgtcgcgcgcgcaccctgtcaatcaccaccaaaccagcacctctcctgacagctgagcgggacgctgcaaaataaaccctgacactctgaccaatgtgaggagagtttactcacacgtgacttgtttttgctcttttggtccgattagaaactttgcagtgtgaaagcgaaccgctccaagagcaaagagcaacaatgtaacatttgtaatctctgtttcggaacaactgaatcgattcacaggtgtgaaagcagccttatgGCCTGTTTCTACTGAGTtcagtacaggtcacctttatccaaaagggtacccttttggtaggCGTGGTGTGCGACAAGGTTTCAAACGacgttattttttactttaagaaatgtctacagtaaggAGTTAGgggttgttcacatatcatacGAGAAACTCtactcacaaaacagatgctttataccagggatgtccaaactcagtcctggagggtcggtgtcctgcagagtttagctccaacttcctttaacacacctaccTAAGTTTCTCATATGGCTAAAAAGAGCTTAATGAGCTGCTTCAGGTGAGTTTAATTGGTTAAATAGGAACTAAAatatacaggacaccggccctccaggaccgagtttagacacccctacTCTATACACAAAAAtgctgtataaatgttcattacaaacctttctatgaacataatttgattataactgcgaaatagcctactgtaacatctgcaattatagaaaataaataaaatgaacacataTAGACCCTTACGGTCTCCAATATGTTACtaattacagtaaaactacacacagcagacatttagtccttatttgggttcaaaaacagcaCGAAAtttagcccacagtcagtgcacaCGTCTCACCtttatctttaatcttcagcagcacgtgtAGCCTCTGTTATTTCGTCATTCCCAGTTCAGAATAGTCCAGAAGCTGATGATaaaagttaaacatggcagtttgttcatgttttaggttgctaaagcatcatttgctgctgtttttttcagcttctcctctgtttttttgcgcttcactctcgcgtttgtccatttctgaaaggatcggatatcAGAGCGATTCAATTATCACGTGCATGTTATTATGAGCTTAAGAAGCTTGTTGTTTCAAATATAGCCACACTGCAAGCTGTCTCGCACTTTTAGACAGCTTCGTTAAACAACAGCAAGGCACGGCAGATTtagttcttcttggctttgtggctgttcatcaagacgttgatgtttgtttgagctcaggttgaccatgggttgttattatatgtatttagtATTACGCTGTAATGTCTCAGcgtgtatttaaaaatgcagcttcctttgttttcatcctgcttctgcgagtgacgtatctctgtcaATCAATAGCGTTCatctgcgcgtctagctccgccttttggtaccctttgttttCGTGCTAGGTACTCTTTGCAAATGgtgaccaaaaagtggtatgcggcggtttgcttttaggtacctatgacagtggaaacggaaccgtactgtaccactcagtggaagcgGGCCATTAGAAATTGTATCATTGATTTGATGAAGGTTTTAAAACGGGTGCccaaaccctgttcctggagatctaccttcctgcagagttcagctccaaccctgattaaacacgaCTAAACCAACAAAGTATGACAGGgctgccctgcagagtttagcaccaacccaaatcaaacacacctgatcaagctaatcaaAGTCTTATTTGGTAGTATTGGTAGTATTGGTCTTATTTCCAGGtgggcaagttggagctaaactctgcaggacaccagccctccaggaccaagtgtggacatggcctatgAGTAGCTCAGTTCACCTTTTCGTTCGTagtttgagtcgttcgttcacgTGACACATGTAGTCGCATATAAGCTCAACCactgtacacagtctgagccggtAGACCCATGATTAGTTCAGCTTTCGACTCTTCTATCATGTGATGAATGAAGGACTTAAAGCTGATAGAAAATGGAACTAATCTTCTCCCCCGTCTGCACAATGTGTGCATGTGCAAATGAACAAATCGCTCCCTTACAGTCGCATAAGATACAGATGCACTTCTGGATCTGTCAGAAAAACATGTTTAGATGTTAACACACACCAGTGAATCCGATTCAGAAGAAAACATCTAAATTCCTCCAGTAGAGGTTTTCTCTTTAACGTAAAGGGAAACGTAGCCCTGATTCGTAGTCCACATCCAGGGTTAATATGCCTTAATTAAACTCTGCATCAAAGCTGTATTGATTAAAACGTTACTAGAGTGCATGTCATTATGGCAAACTCCGTGGTTTATGCACTCTTGGTCACACTGGATGATCAAACTCTTCCCAGCGCTGTCTTCCAAGTGTCCACAGTGGCTGAGGAAATGCTCCGGTGGTTCACAGGGCTCTGGAAATCCTCCTGAAACTGCTCAAAGAGACGTACAATGTGGGTTCTGGAGGTGCCGTAAGCATATTCATCAACAACATCTTTGATGAGTCCTTTAAAATAGTCTGACTATAGACTAAGTGTTAGTTGAATGTCTGCATAATCTTAATATTAATTCAATACAATCTGTATTTACCTTCATATACTAATATGCATTGATATTCAGTCTTACAAAAATGACTCCCACAATGCAGAATTGATGGCCACCTGAACAGAGAGAGAACATCTGTATAAATCACGACATGCCCTTCAAAGCAGGATTAAATGTGTGGGTGATCATTTGGACCAAACAGTATTTCATAATATGCTTTATTACAATCACCTACCCTGCAACATGGGACTCGTCAGCAGTTtgttgttaaaggaaggatcatcTCCAGAGACTATTAATGTTTGGGACTTTGTCTAATACAGAAAACTACACTTTACTTTTTAATATGAATGGTGTCGATTAATATGGCGTGAGCATCATTAAAACactcttttgttttcaaatgttcaTGCTTTTTAATTTTGACATTGGCAGTCTTGCCTCAAATTGCAGTAGAGCTTGAATTCAAttgaaataatgtattaatttgcCCGAGATGATGAAACCTGAAATATTATACGGTTTACTTCATTCAATgtacaaaaatatttcatttcacaATGACAATTAAATTGAGAGGATGCAGACatgactgacaaaaaaaaaatacaaacagctCCTATTTCGTATGTTCTGATTTTCATAATATGTGTTTGATACCATGAATTGGAAATTAATCAAGAGTGTTGTAGATGCTGATAATTGAAAACAATATGGGCTGTGTTGGCTTTGAAAGGTAACAAAAAGAAATGCAAACAAATATGTTATTGCTTTTTTCTTGGTGGAACAGCCAAAGGAAGAAAATGCCTTACATGTGTGAactatgatttaataaataatattcacaCTCTCACTTTGCCTTTTCAGTCATctttatgatttaaaaatgtttgtg
>TCONS_00016544
CATAAGTGTGCGCCACCCGCACCGCTGCGTCTTGATTTGGCTggaaaaaagAACAGCAGATTATTAtgaagatggcgtttattaaagaggagagtgaagacgtGACggttgaagaaacattcacagtcaaacatgaagagaCTGAAGAAGCTTTCAGTGTCAAATGTGAAGATGCTGAGGAGCAAACAGACCTGATTGTGGTGAAAGTGGAGAGTGAGGATGTGAATGAAACAGAAGAGGTGAATCCTCACGACTGCAGAACTGGAGAAAACTCGCCAAAAAGTGCACAGAAGACTGCATGTCATGTTTTCTGCCAGctttgtggaaagagttttgttAATAAAGGAACTCTTAAAATCCACATGAGacttcacaccggagagaagccgtacaGCTGCCAAGAGTGCGGAGAAAGATTCCCTCGCATAGACACTTTAAAAGCCCACATGAacattcacaccggagagaaaccttacttatgccaactgtgtggaaagagttttcaACAGAAATGCAATCTTACGACACACATGAgggttcacaccggagagaagcctttcacgtgccaacagtgtggaaaatgtCTCTCAACCAAGCGGCGGCTTGATGAACACGTGCGGATGCACTTCAGAGAGAACAGCTTTAAATGCCATCAGTGTGAAATGAGTTTCTCAGACATGAACATCCTCAAGAGGCACATAACAACTCACATCGGACAGAAGCCATTTATATGCCTGCAGTGTGGAGTGAGCTGCACAAACAAGGCAAACCTCAAGactcacatgatgatccacactggggaAAAGCCATTCGCCTGCAGTGAGTGCGGGAAGTGCTTCTCACGGAAACACTGTCTTCAGGATCACATGgtgattcacaccggagagaagccgtacacgtgtgatcagtgtggaaagagtttcactaaCAGTGGAAACCATTATCTccacatgaaaatccacactagagagaaaactCATCTGATATGATGTCTTCATCCCGGGGAACGGCAGTATtggcacacaaacatgcacataccCTCGAAACACTAAAGCACATgcgttgagctgttgacagtcgtatatgtgtcccacactgc
>TCONS_00016545
CGAATGagcaggacttttattttgttctGGCGACGTGACGTTATAAGAATGCACCACTCGCGCTACACCGTCTGATTCGGCCGAAGAAAGAGTGCCCAAACTCTCAGTAAAGCAGATTATTATGaggatggcgtttattaaagaggagattGAAGACGTGAAGATTGAAGAAGCTTTCagagtcaaacatgaagatcctgAGGAGCAAACAGACTTTATTGTGGTGAAAGTGGAGAGTGAAGATCTGAATGAATTGGAAGAGGTGAATCCTCACGATGGCAGGACTGGAGAAAATTCACAGACTGAAAATACTCAGTCATCAAGAAGTGCTCACAACACTAAAACTGCGCATGTTTTCTGCCAGCTTTGTGGAAAGAGTTTCGTTAATAAAGGAACTCTTAAAGTGCACATGAAAATTCACTCCGGAGAGAAGCCGTACAGCTGCCAGCAGTGTGGAGCAAGTTTCCCTCGCATAGACACTTTAAAAGCCCACATGAacattcacaccggagagaaaccttacttatgccaactgtgtggaaagagtttcggtCACAAAGCATCTCTTTATATTCACAAGAGACTCCACACCGGAGAGATGCCTTATGCCTGCAAACTGTGTGGGAAATCCTTCAAACAGAAATCTAATCTTACGACACACATGAgggttcacaccggagagaagcctttcacgtgccaacagtgtggaaaatgtCTCACAAGTAAGCGGCGGCTTGATGAACACGTGCTGATGCACTTCAGAGAGAACAGCTTTAAATGCCATCAGTGTGAAATGAGTTTCTCAGACATGAACATCCTCAAGAGGCACATAACAACTCACATCGGACAGAAGCCGTTTATATGCCTGCAGTGTGGAGTGAGCTGCACAAACAAGGCAAACCTCAAgactcacatgaggatccacactggagaaaagccgttCGCCTGCCcatattgtgaaaagtgcttttCACGGAAGCGTAGTCTTCAGGATCACATGggaattcacaccggagagaagccgtacacGTGTgagcagtgtggaaagagtttcactaaCAGTGGAAGCCATCATCTCCACATGAggactcacaccggagagaagcacTTCACCTGCcagcagtgtggaaagagcttttcGCAGAACGGAACTCTTAAGGatcacatgagaatccacacgaGAGAGAAACCTCTCTAAATGTGAGCTGCTCAAACAGTCAACTCTCGACTTCTGCTGGaacttttctgtttgttttgtctaAGTTGTATGGCTGACATGCCTATGAGCATCATGACAAACTTGTCTTAGGCTGCTTTctcacctacacttttgtttcggaacgcatctcgtttgcccagttagcg

Function

symbol description
si:ch211-210b2.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097620 ENSDARG00000098031

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016543 False 5486 mRNA 0.42 3 618081 637162
TCONS_00016544 False 1099 mRNA 0.46 3 618376 623541
TCONS_00016545 True 1365 mRNA 0.45 3 627619 633314

Neighbor

gene id symbol gene type direction distance location
XLOC_008201 si:ch73-144d13.4 coding upstream 36126 577698 ~ 581955 (+)
XLOC_008200 NA coding upstream 70200 546153 ~ 547881 (+)
XLOC_008199 pcsk7 coding upstream 75948 518092 ~ 542133 (+)
XLOC_008198 ftr86 coding upstream 101331 509126 ~ 516750 (+)
XLOC_008197 NA coding upstream 118258 497208 ~ 499823 (+)
XLOC_008203 znf1013 coding downstream 1295 638457 ~ 643471 (+)
XLOC_008204 NA coding downstream 21200 658362 ~ 669444 (+)
XLOC_008205 si:dkey-7i4.24 coding downstream 77041 714203 ~ 721558 (+)
XLOC_008206 NA coding downstream 131019 768181 ~ 768435 (+)
XLOC_008207 znf970 coding downstream 144555 781717 ~ 787548 (+)
XLOC_008463 BX663520.1 misc downstream 20615029 21252191 ~ 21252282 (+)
XLOC_008218 CU571333.1 non-coding downstream 441827 1078989 ~ 1079104 (+)
XLOC_008225 NA non-coding downstream 584655 1221817 ~ 1234693 (+)
XLOC_008229 dre-mir-15c non-coding downstream 906524 1543686 ~ 1543768 (+)

Expression


Co-expression Network