XLOC_008231 (nmd3)


Basic Information

Item Value
gene id XLOC_008231
gene name nmd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1653779 ~ 1672461 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016600
GACAACGTGTCGTGACGTCATCaacaggcgcacacacacacgtgcggAGTTCGTGTGATTTTCGCGAGGAGATGTTCATTTAGTTGAGTCGATCAACGCTGATTTAACAACACATCATGGAGTACATGCAGGCTCCGCCATCCAGCAGCCACGGCAATATTCTTTGCTGTACGTGTGGCGTTCCCATTCCTCCAAACCCAGCCAACATGTGTGTCTCCTGCTTGAGGACTCAGGTGGACATCTCTGAGGGCATCCCCAAACAAGTGACCATCCATTTCTGCAGGCAGTGTGAACGGTACCTGCAGCCTCCGGGGTCGTGGGTTCAGTGCGCTCTGGAGTCCAGAGAGCTTCTGGCTCTGTGCCTTAAGAAACTCAAGGCCTCCATGTCAAAGGTGCGGCTTATTGATGCTGGCTTCTTATGGACCGAGCCCCACTCTAAGAGGATCAAGATCAAGCTGACCATCCAGAAGGAGGTCATGAACGGAGCCATTCTGCAGCAGGTTTTCACCGTGGAGTTCGTGGTTCAGGGTCAGATGTGTGAGGACTGCCATCGTGTGGAGGCCAAAGACTTCTGGAAAGCTGTTGTGCAAGTCAGgcagaagACTGTCCACAAAAAGACATTTTACTACTTGGAGCAGCTGATTTTGAAGCACAAGCTGCATCAGAACACAGTGCGCATCAAAGAGATTCATGAGGGAATCGATTTTTACTATGCCACTAAGCAGCACGCTCAGAAGATGGTGGATTTCCTGCAGTGCACTGTTCCCTGCAgGTCAAAGGCGTCCCAGCGGCTGATCTCTCACGATGTTCATTCAAACACCTACAACTACAAAAGCACCTTTTCTGTGGAGATAGTTCCTGTGTGCAAGGATAATGTGGTGTGTCTGTCTCCACGGCTCGCTCAGAGTTTGGGAAACATGGGTCAGGTGTGCGTATGTGTCCGAGTCACCAGCTCCATACACCTGATCGACCCAAACACCTTGCAGAttgcTGAGGTGGATGGCAGCACGTTCTGGCGTCACCCATTCAACAGTCTGTGCAGCCCACGCCAGCTGGAGGAGTTCATCATCATGGACATTGACATCATCAGAGATCAGCGCTTAGGAGCGGGTGCTGGACTCAAGTCCAATAAGcaCACTCTGGCGGAGGTCTGGGTTCAGAAGACATCAGAGATGGACTCCAGTCATCAGTATCACTGCAGAACCTTCATGGGTCATTTGCTGAACATTGGAGATCTGGTGCTGGGCTTTGATTTTGCCAATGCCAATATCAACGACGAGTTCCTCAATAAGATGAACCCTCAGCATGTTCCTGATGTGGTGCTGATCAAGAAGAGTTACGACCGCATGAAGAGAGCCAGAAAAAGAGTCTGGAAGCTGAAAGAGATGGACAGAGAGAAAGACGCTGCCGATACAGATGATGAGAGaCAATACACTGAGTTCCTGGAGGACCTGGAGGAGGACGAGATGCTGAGGAAGAACATCAACATCTTCAGAGATGCTTCAAAGATCCCCGTGGAGGAGAGTGACACTGATGACGATGGAGCACCCAGGATCTCTCTGGCGGAGATGTTAGAGGACCTGAGCCTGAGTGACGCCACGGGTGGAGAAGGAGCAGACATGATGACAGACTAATCAACCTcaattaaagagacagtacacccaAAGCTGAACATTCTGTCTCCATTTATGTAAACATCACTTgctaaaacctgtttgagtttctttcttttcttacTTTTGTTAAGAAGGTAGTTTGAAGAATGCCAgagacctgtaaccactgacatccattgtattttttgtttcttctatggaggtcaatggttacaggtttatagcattcttcaaaacgtcttcttttgggttcaacagaagaaagaaactcagaaatgtttggaaacacttgagggagagtaaataatga
>TCONS_00016601
TCCACAAAAAGACATTTTACTACTTGGAGCAGCTGATTTTGAAGCACAAGCTGCATCAGAACACAGTGCGCATCAAAGAGATTCATGAGGGAATCGATTTTTACTATGCCACTAAGCAGCACGCTCAGAAGATGGTGGATTTCCTGCAGTGCACTGTTCCCTGCAgGTCAAAGGCGTCCCAGCGGCTGATCTCTCACGATGTTCATTCAAACACCTACAACTACAAAAGCACCTTTTCTGTGGAGATAGTTCCTGTGTGCAAGGATAATGTGGTGTGTCTGTCTCCACGGCTCGCTCAGAGTTTGGGAAACATGGGTCAGGTGTGCGTATGTGTCCGAGTCACCAGCTCCATACACCTGATCGACCCAAACACCTTGCAGAttgcTGAGGTGGATGGCAGCACGTTCTGGCGTCACCCATTCAACAGTCTGTGCAGCCCACGCCAGCTGGAGGAGTTCATCATCATGGACATTGACATCATCAGAGATCAGCGCTTAGGAGCGGGTGCTGGACTCAAGTCCAATAAGGTCAGaggtcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgcagtacgaaaatgcattgtgtgtgtttgtgtttgcagcaCACTCTGGCGGAGGTCTGGGTTCAGAAGACATCAGAGATGGACTCCAGTCATCAGTATCACTGCAGAACCTTCATGGGTCATTTGCTGAACATTGGAGATCTGGTGCTGGGCTTTGATTTTGCCAATGCCAATATCAACGACGAGTTCCTCAATAAGATGAACCCTCA

Function

symbol description
nmd3 Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in ribosomal large subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in alar plate midbrain region; head; immature eye; optic tectum; and somite. Orthologous to human NMD3 (NMD3 ribosome export adaptor).

GO:

id name namespace
GO:0000055 ribosomal large subunit export from nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043023 ribosomal large subunit binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050320-149 Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in ribosomal large subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in alar plate midbrain region; head; immature eye; optic tectum; and somite. Orthologous to human NMD3 (NMD3 ribosome export adaptor).

Ensembl:

ensembl_id ENSDARG00000015676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016600 False 1926 mRNA 0.49 16 1653779 1672461
TCONS_00016601 True 788 lncRNA 0.49 6 1661092 1668218

Neighbor

gene id symbol gene type direction distance location
XLOC_008228 smc4 coding upstream 80650 1534644 ~ 1573129 (+)
XLOC_008230 dre-mir-16a coding upstream 109836 1543857 ~ 1543943 (+)
XLOC_008229 dre-mir-15c coding upstream 110011 1543686 ~ 1543768 (+)
XLOC_008227 il12a coding upstream 205074 1440364 ~ 1448705 (+)
XLOC_008226 schip1 coding upstream 217072 1372343 ~ 1436707 (+)
XLOC_008232 NA coding downstream 20736 1693197 ~ 1718629 (+)
XLOC_008233 otol1b coding downstream 32706 1705167 ~ 1711472 (+)
XLOC_008234 cul3b coding downstream 93527 1765988 ~ 1795631 (+)
XLOC_008235 fam124b coding downstream 123852 1796313 ~ 1802034 (+)
XLOC_008236 CU638704.1 coding downstream 201197 1873658 ~ 1873778 (+)
XLOC_008463 BX663520.1 misc downstream 19579730 21252191 ~ 21252282 (+)
XLOC_008225 NA non-coding upstream 419086 1221817 ~ 1234693 (+)
XLOC_008218 CU571333.1 non-coding upstream 574675 1078989 ~ 1079104 (+)
XLOC_008206 NA non-coding upstream 885344 768181 ~ 768435 (+)
XLOC_008239 CU695208.1 non-coding downstream 686050 2358511 ~ 2358625 (+)
XLOC_008245 CR382327.2 non-coding downstream 1001474 2673935 ~ 2674590 (+)
XLOC_008246 CR382327.3 non-coding downstream 1012594 2685055 ~ 2685706 (+)

Expression


Co-expression Network