XLOC_008233 (otol1b)


Basic Information

Item Value
gene id XLOC_008233
gene name otol1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1705167 ~ 1711472 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016602
TATGAATGCTCTCATCTCTCCTCTTTCTCGACAGACAGAAAATGGGGATGTTCTGTGCACGCTCCGTCTTGGTAACTGTTTTGGCACTGACCTTTATAATCCTGTGCGACACATTCAAACCCACTCAGAGGCCAAAGTATCAGTACACCAAGAAACCCCCTAGAGAGGTGGTCCAAACCACCACATATGCAGGAAAGCCTACGGTCACAGCACGGATTGTGGACTACACGAAAACACGAGAGCAGCGCACCCCTGTGTACGTGACAGAGAGCACTACAGTGACTGCTGACAGCTACATAGACTACCCTACAGACACCAGCGCATCTCCCACCGCAGCCAAAGACAACTACACGCTAGACTACAACGAATGCTACTTCAACTTCTGCGAGTGCTGCCCACCGGAGAAAGGCCCACAAGGGTTCAAAGGAGACATGGGACTGCCAGGACCCCCAGGGGAAAAGGGAGCACCTGGACCAAGTGGTCTACCAGGCCCAATAGGGCCAAAGGGCAACTCAGGATCTAAAGGGGATAAAGGAGAGAAAGGTGATCAAGGAAACACAGGATTCGCTGGAACGCCAGGAAACCAGGGAAAGGCTGGAATGAAAGGTGAGATGGGTAATAAAGGTGAGAAGGGTGCTGCTGGCCTGCCAGGATTCAAAGGAGAAAAGGGAGAAAAGGGAGATCCCAACTTTAATGTGTCAAAAGGCGACCAGGGAGAGCCAGGCAAAGATGGACTTCCAGGACCCCAAGGCTCAGCTGGTGAAAAGGGTGAAAAGGGGGAGAGAGGAGAGTGCGGTTTGCTTGGCGACAGGGGCCAGAAAGGTGAGCCTGGGGACCCTGGGTCGCCAGGTGTGCGTGGAGATCCTGGTCCTTCTGGGCAACATGGCATGCATGGAAATCCAGGCATCACTGGAGAACGAGGGGAACCAGGAACTCCAGGACCAAAGGGTGAGCCAGGAATACAAGGGCCACCTGGAACCAAAGGCTTGAGAGGTCTCAGGGGAATCAAGGGTGACCGCGGCCCCCAGGGGAAGCGTGGAGATCGAGGCCTACGGGGAATGAAGGGTGCCATGGGTACAAGCGATTCGAGAATCAGATCCGCTTTCAGTGTTGGACTATATCCCAGCAAGTCTTTTCCTCCTTCAGGATTTCCAGTCCGCTTTGACAAGGTCTTCTACAATGGGGAAAATCATTACGACGTAGTCTCATGCAAATTCAACTGCAGCTACTCTGGAGTTTATGTGTTCTCCTACCAAATCACAGTGAGGAACAAACCACTACGTGCTTCTTTAGTGGTGAACGGGGTGCGCAAGGTACGCTCGAGGGACACTCTTCAACCTCAGGACATTGACCAGGCATCCAATCTAGTGATCCTGAAGCTGGACGTCGGAGACCAGGTATGGGTGGAGACGCTGAGAGACTGGAATGGTGTTTACTCCAGCAGTGAGGATGACAGCACCTTCTCCGGGTTCCTGCTTTACCCTGACTAACACTCTTTCCAAGGCTTAGGCTCTGTCCACACGAACACAGGTACTTTTTTTCTACACGGTTTCGGCTGTTTGTCCACATGACAGCacgggtcaggtgactgaaactttctgaaaactctgGTCAGGGTGAAGATTTTTCAAAACTCCGGGTACAGTGTGGACATGCGGATACTACAGCCAGAGTGTTTGCCTCATGACCTAAGCGTAAGCACTGTTTTcttatttctgattggccaacacacttgggttcacaccaaacgcaAAATTCTGCACATTTGTGGCAAAACCATTGCATATTTTGCGACGTTCGCCCGAAGGATGGTTATCCACCTCTGTTCTCATGTTTGCATTGATTTGTATGCTATTTACTCGTGTTAATTCCCATTTGGTGTGGACCCAGGATAAGTGACATTATCGCCCCCTGTTGGTTCGGCATGCCCTCACCATGCATCACAGTGCACTTTTGCAGTTTTATGTGGACGgagattttttaataaaacgaAAGTAGGGAAAACCCCGCTTAAAACAATACCCGTGTACGTGTGGACATGAACTCAATCTACAACTGAACTTTACATGAAATTACGACCATTTTATGACCAATTTTGTGTAGTGTTACGACAGAGAGGCAGACGTGTACTGTTTTAATGAGCATCGGCCAACACTACTGATACTATTGTAACTACATCGGATTGTAATTTTACTGGACTACATTAAGTCTAATTTACAAagtgaccctgaaccacaaaaccagtcatatgtGTCAATTTTTGGAAAATACTTCATCTGAAAGCTGACAATTAAGCTTTCCAtagatgtatggtttgttagggtAGAGCATTATTTGGTCAAGATACAACTACACTGCAAAAACAGGATGACTCAAcataaaattgtaaggcaacttgcttccatagactgtaaaagatatggacgtag

Function

symbol description
otol1b Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen-activated tyrosine kinase receptor signaling pathway and extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human OTOL1 (otolin 1).

GO:

id name namespace
GO:0038063 collagen-activated tyrosine kinase receptor signaling pathway biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005587 collagen type IV trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080416-3 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen-activated tyrosine kinase receptor signaling pathway and extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human OTOL1 (otolin 1).

Ensembl:

ensembl_id ENSDARG00000058960

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016602 True 2429 mRNA 0.48 4 1705167 1711472

Neighbor

gene id symbol gene type direction distance location
XLOC_008231 nmd3 coding upstream 32706 1653779 ~ 1672461 (+)
XLOC_008228 smc4 coding upstream 132038 1534644 ~ 1573129 (+)
XLOC_008230 dre-mir-16a coding upstream 161224 1543857 ~ 1543943 (+)
XLOC_008229 dre-mir-15c coding upstream 161399 1543686 ~ 1543768 (+)
XLOC_008227 il12a coding upstream 256462 1440364 ~ 1448705 (+)
XLOC_008234 cul3b coding downstream 54516 1765988 ~ 1795631 (+)
XLOC_008235 fam124b coding downstream 84841 1796313 ~ 1802034 (+)
XLOC_008236 CU638704.1 coding downstream 162186 1873658 ~ 1873778 (+)
XLOC_008237 sbds coding downstream 180217 1891689 ~ 1898233 (+)
XLOC_008238 rsrc1 coding downstream 478757 2190229 ~ 2415435 (+)
XLOC_008463 BX663520.1 misc downstream 19540719 21252191 ~ 21252282 (+)
XLOC_008225 NA non-coding upstream 470474 1221817 ~ 1234693 (+)
XLOC_008218 CU571333.1 non-coding upstream 626063 1078989 ~ 1079104 (+)
XLOC_008206 NA non-coding upstream 936732 768181 ~ 768435 (+)
XLOC_008239 CU695208.1 non-coding downstream 647039 2358511 ~ 2358625 (+)
XLOC_008245 CR382327.2 non-coding downstream 962463 2673935 ~ 2674590 (+)
XLOC_008246 CR382327.3 non-coding downstream 973583 2685055 ~ 2685706 (+)
XLOC_008247 NA non-coding downstream 1102598 2814070 ~ 2815714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_04692404_04694159 OTOL1B coding CI01000092 null 4691840 ~ 4695476 (-)