XLOC_008237 (sbds)


Basic Information

Item Value
gene id XLOC_008237
gene name sbds
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1891689 ~ 1898233 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016607
TGAGACACAGCCACACTGCAAATGTTTCCAACCCTGTAGATGTCGCTGCACCGATGCGTCACAGATACTGACGCAGTTTTAAACGAGGAAGAAGCAGGAAGACAGCAGTGTGGAGACCCGCGTTCATAAAGAGAGTTAAACATGTCAATATTCACGCCAACTAACCAGATCAGGTTAACAAATGTTGCCGTCGTGAGGATGAAGAAAGGGGGGAAAAGATTTGAAATCGCCTGCTATAAGAACAAAGTGATGAGCTGGAGATCTGGAGCgGAGAAAGATCTTGATGAAGTCCTGCAAACCAACACAGTCTTTGTGAATGTGTCCAAGGGTCAAGTGGCGAAGAAAGAAGACCTATCCAATGCTTTTGGAACAGATGACCTGACTGAAATATGCAAACAGATTTTGTCCAAAGGAGAACTGCAGGTATCAGACAAGGAACGACAGAGTCAACTGGAGCAGATGTTTCGTGATATTGCAACTATTGTGGCTGAAAAATGTGTGAATCCTGAGACCAAGCGGCCTTACACAGTGAACCTTATAGAGAGAGCCATGAAGGACATCCACTTCTCTGTTAAAGCAAACAAAAGCACTAAACAGCAGGCTCTTGAGGTCATCAAGCAGCTGAAGGAATCCATTCAGATCCAGAGAGCTCACATGCGCCTGCGCTTCGTCCTGCCAGCCAAGGATGGGAAGAGGCTGAAGGAGAAGCTCAAACCATTAATAAAGGCAGTGGAAAATGAGGACTTTGACGACCAGCTGGAAATGgtgtgtttgatagaTCCAGGCTGTTTTCGGGATATTGATGAGCTCATCCGCTGTGAGACCAAAGGAAAGGGAACTCTTGAGGTGCTCAGTCTCAAAGATGTGGAGGAAGGGGATGAGAAACTCGAATAAACACTTCATTtattttcacctgctttctttaacacattaaactactgctgatttattttatatgggCTGCTCGACTGTTGGAGTTTGAATGTGGCCAAACTATTAGCAGCTACTGCATCAGTATTTCAATACATTGTTAATAATAGACtctaaaatagtaataaaatccacattttattttctgtgaaaatggaatacatatttattttgattaataacAGAAGTCAAAATATGATATTCTGCAAGAGTGcatctttattattaatattattattttgctttcttTTAAATCTGAGGTGCCGAATTCCCATTTTCAGCAGGGTTTGTTAATCTACGAAGAAagtagaaaataatttaaaagttttaattgtcTAATCTGATGCCAGAGAAACTTTATCTTGTCACAGTTAAGACTCCCTTTACATTCACTATTtgtagtatttaaataaataagcatcaACCTCTATATAAACCTCTATAAACTGTGATTCTGCTTAGACTGAAGGTGAAATTCGTTGTTCTTTGGTTtaacactaaaataaataacattgttCTGCGTTCTACAAA
>TCONS_00016608
GACACAGCCACACTGCAAATGTTTCCAACCCTGTAGATGTCGCTGCACCGATGCGTCACAGATACTGACGCAGTTTTAAACGAGGAAGAAGCAGGAAGACAGCAGTGTGGAGACCCGCGTTCATAAAGAGAGTTAAACATGTCAATATTCACGCCAACTAACCAGATCAGGTTAACAAATGTTGCCGTCGTGAGGATGAAGAAAGGGGGGAAAAGATTTGAAATCGCCTGCTATAAGAACAAAGTGATGAGCTGGAGATCTGGAGCgGAGAAAGATCTTGATGAAGTCCTGCAAACCAACACAGTCTTTGTGAATGTGTCCAAGGGTCAAGTGGCGAAGAAAGAAGACCTATCCAATGCTTTTGGAACAGATGACCTGACTGAAATATGCAAACAGATTTTGTCCAAAGGAGAACTGCAGGTATCAGACAAGGAACGACAGAGTCAACTGGAGCAGATGTTTCGTGATATTGCAACTATTGTGGCTGAAAAATGTGTGAATCCTGAGACCAAGCGGCCTTACACAGTGAACCTTATAGAGAGAGCCATGAAGGACATCCACTTCTCTGTTAAAGCAAACAAAAGCACTAAACAGCAGGCTCTTGAGGTCATCAAGCAGCTGAAGGAATCCATTCAGATCCAGAGAGCTCACATGCGCCTGCGCTTCGTCCTGCCAGCCAAGGATGGGAAGAGGCTGAAGGAGAAGCTCAAACCATTAATAAAGGCAGTGGAAAATGAGGACTTTGACGACCAGCTGGAAATGGAGTTGTTTTTGCtctttcaggtgtgtttgatagaTCCAGGCTGTTTTCGGGATATTGATGAGCTCATCCGCTGTGAGACCAAAGGAAAGGGAACTCTTGAGGTGCTCAGTCTCAAAGATGTGGAGGAAGGGGATGAGAAACTCGAATAAACACTTCATTtattttcacctgctttctttaacacattaaactactgctgatttattttata

Function

symbol description
sbds Acts upstream of or within exocrine pancreas development; granulocyte differentiation; and ribosome biogenesis. Is expressed in gut; liver; pancreas; and pharyngeal arch 3-7. Used to study Shwachman-Diamond syndrome. Human ortholog(s) of this gene implicated in Shwachman-Diamond syndrome and aplastic anemia. Orthologous to human SBDS (SBDS ribosome maturation factor).

GO:

id name namespace
GO:0002573 myeloid leukocyte differentiation biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042256 mature ribosome assembly biological_process
GO:0030851 granulocyte differentiation biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1116 Acts upstream of or within exocrine pancreas development; granulocyte differentiation; and ribosome biogenesis. Is expressed in gut; liver; pancreas; and pharyngeal arch 3-7. Used to study Shwachman-Diamond syndrome. Human ortholog(s) of this gene implicated in Shwachman-Diamond syndrome and aplastic anemia. Orthologous to human SBDS (SBDS ribosome maturation factor).

Ensembl:

ensembl_id ENSDARG00000027803

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016607 False 1461 mRNA 0.39 5 1891689 1898233
TCONS_00016608 True 974 mRNA 0.45 5 1891692 1897728

Neighbor

gene id symbol gene type direction distance location
XLOC_008236 CU638704.1 coding upstream 17911 1873658 ~ 1873778 (+)
XLOC_008235 fam124b coding upstream 89655 1796313 ~ 1802034 (+)
XLOC_008234 cul3b coding upstream 96058 1765988 ~ 1795631 (+)
XLOC_008232 NA coding upstream 173060 1693197 ~ 1718629 (+)
XLOC_008233 otol1b coding upstream 180217 1705167 ~ 1711472 (+)
XLOC_008238 rsrc1 coding downstream 291996 2190229 ~ 2415435 (+)
XLOC_008239 CU695208.1 coding downstream 460278 2358511 ~ 2358625 (+)
XLOC_008240 hephl1a coding downstream 523199 2421432 ~ 2472933 (+)
XLOC_008241 panx1a coding downstream 577661 2475894 ~ 2489934 (+)
XLOC_008242 wdr53 coding downstream 600263 2498496 ~ 2507988 (+)
XLOC_008463 BX663520.1 misc downstream 19353958 21252191 ~ 21252282 (+)
XLOC_008230 dre-mir-16a non-coding upstream 347746 1543857 ~ 1543943 (+)
XLOC_008229 dre-mir-15c non-coding upstream 347921 1543686 ~ 1543768 (+)
XLOC_008225 NA non-coding upstream 656996 1221817 ~ 1234693 (+)
XLOC_008245 CR382327.2 non-coding downstream 775702 2673935 ~ 2674590 (+)
XLOC_008246 CR382327.3 non-coding downstream 786822 2685055 ~ 2685706 (+)
XLOC_008247 NA non-coding downstream 915837 2814070 ~ 2815714 (+)
XLOC_008248 NA non-coding downstream 946579 2844812 ~ 2855629 (+)

Expression


Co-expression Network