XLOC_008241 (panx1a)


Basic Information

Item Value
gene id XLOC_008241
gene name panx1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2475894 ~ 2489934 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016616
AAAGGAAGAAAAAGCAAAACTTAAAACGAAGaagaaaaacaagaacaaaagcGAAATGTACACGGTAACGCTGTCCTCGCTTGAGTATTCGCTTCTAAAAGCGCCTAACTTCATTTAACGCAATTTTGGGATTTTAACTAGCTGATAGATTAATTATTTTGACAAATAATGCGATTTCTTAttatttaaatcttaatttaGATACATGGTTTTGAATAAAGTTAGAGTTTGTCGGCAATAAACGAGTATAGTCATGGCTATAGCGCACGCGGCCACGGAGTACGTGTTCGCGGATTTTGTGCTGAAGGACCCGGCGTCAGAAAACAGGTATAAAGGCATTCGCTTAGATTTAGCCCTGGATAAAATAGTCACCTGTGTCGCCGTGGGTCTACCTTTGCTTCTCATTTCTCTAGCCTTCGCTCAGGAAGTTTCTGTCGgTACACAGATCAGTTGTTTCGCCCCTACAGCGTTCTCATGGCGTCAGGCAGCTTACGTGGATTCATACTGTTGGGCAGCAGTGCAGAAACAGGACACTGGAGGCCTTCCTTTATGGCTGCATAAGTTTTTCCCTTATATCCTGCTGCTGGTGGCAGTGTCAGTTTACATGCCAGCGTTGTTTTGGCGGTTTACAGGAGCCCCGGTGCTTTCTTCTGACCTCACATTTATAATGGAAGAACTGGACCGTTCCTACAACAGAGCCATCAAATTGGCTAAATGCCTTCACACTGCAGGAAAAGTAGAAACACCGCCAGCTCCAGTGGATACAAACAGCTCTGTGATAGACCTCACTGAGAGCTATTTTAAATATCCTCTGGTGGAGCAGTACTTGAGGACCAAGCGCTACTCTAAAGGATTACTGATCCGCTACCTTCTTTGCCGCACCATCACTGTCTTGGCCCTCACTCTAGCCTGCATCTACCTTTGCTATTACATCAGCCTCTCCACCACCGATGAGTTTTCGTGTGACATCCGCTCTGGTGTGGTTGTCAATGACTCCTCCGTGCCTCCAGCCCTGCAGTGCAAGCTAGTTGCTGTGGGCATCTTTCAGCTCCTGAGCTACATCAATCTTTCAGTGTATTTGCTGCTGTTGCCATTGTGCATGTTTGCCATGTTGGTTCCATTCAGAAGGACCAAGGGCTTCCTGAAGCCTTTCGAGATGTTGCCCACAATAGGTGTGATGCAGTTTGGGCAGGCGACCTGGGATGATCTTGCTCTGTATCTGCTGTTTCTGGACGAGAACCTCAGTGAGCTGAAGAGCTATAAGTGCCTTAAGGTATTAGAGTTGTTAAAAGAGCAGGGAGATGAGTCTTTTGACCCCATGTTGCTGTTGCGGACACTTGGACAGGTTAAAACAGATGTGGTGGACGGCAGATTACCGCAAAAGGACCAGAAAATCTCCAGCACTAATAATGGGGACACAGAGCTGAAAGAGTTTGCTCCTCTGCTGCCGGAGGACTGCTTGCGAAAGCATGAAGACGACAAGGCTGTCCGCCAGAGGGTCATCTAAATAGCCATTTATAGCATATGCTGACTGTCTGCATTGTAATGACAAGTGGAGGAGAAACAATGTGAAAGTTTTGTCCTTTCTTAAATGACTAAGTTTGCacaaaaattcagtttttgtgctttttgtaatgggggggggggggggg

Function

symbol description
panx1a Enables gap junction hemi-channel activity and voltage-gated channel activity. Predicted to be involved in cation transport and cell-cell signaling. Predicted to act upstream of or within ion transport and positive regulation of interleukin-1 production. Located in ruffle membrane. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Orthologous to human PANX1 (pannexin 1).

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0032587 ruffle membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022829 wide pore channel activity molecular_function
GO:0022832 voltage-gated channel activity molecular_function
GO:0015267 channel activity molecular_function
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-766 Enables gap junction hemi-channel activity and voltage-gated channel activity. Predicted to be involved in cation transport and cell-cell signaling. Predicted to act upstream of or within ion transport and positive regulation of interleukin-1 production. Located in ruffle membrane. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Orthologous to human PANX1 (pannexin 1).

Ensembl:

ensembl_id ENSDARG00000025285

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016616 True 1652 mRNA 0.46 6 2475894 2489934

Neighbor

gene id symbol gene type direction distance location
XLOC_008240 hephl1a coding upstream 2961 2421432 ~ 2472933 (+)
XLOC_008238 rsrc1 coding upstream 60459 2190229 ~ 2415435 (+)
XLOC_008239 CU695208.1 coding upstream 117269 2358511 ~ 2358625 (+)
XLOC_008237 sbds coding upstream 577661 1891689 ~ 1898233 (+)
XLOC_008236 CU638704.1 coding upstream 602116 1873658 ~ 1873778 (+)
XLOC_008242 wdr53 coding downstream 8562 2498496 ~ 2507988 (+)
XLOC_008243 cux1b coding downstream 30385 2520319 ~ 2543834 (+)
XLOC_008244 SH2B2 coding downstream 69941 2559875 ~ 2578139 (+)
XLOC_008245 CR382327.2 coding downstream 184001 2673935 ~ 2674590 (+)
XLOC_008246 CR382327.3 coding downstream 195121 2685055 ~ 2685706 (+)
XLOC_008463 BX663520.1 misc downstream 18762257 21252191 ~ 21252282 (+)
XLOC_008232 NA non-coding upstream 757265 1693197 ~ 1718629 (+)
XLOC_008230 dre-mir-16a non-coding upstream 931951 1543857 ~ 1543943 (+)
XLOC_008229 dre-mir-15c non-coding upstream 932126 1543686 ~ 1543768 (+)
XLOC_008247 NA non-coding downstream 324136 2814070 ~ 2815714 (+)
XLOC_008248 NA non-coding downstream 354878 2844812 ~ 2855629 (+)
XLOC_008250 NA non-coding downstream 375690 2865624 ~ 2865929 (+)

Expression


Co-expression Network