RNA id: CI01000054_01613638_01617674.mRNA


Basic Information

Item Value
RNA id CI01000054_01613638_01617674.mRNA
length 1768
RNA type mRNA
GC content 0.40
exon number 6
gene id CI01000054_01613638_01617674
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1613318 ~ 1618357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATAGCACTATTTTAAAAACACAGAGGAAGTTCCAGAGGGACCCTATAGCTTGAAATGCTCTTCCAGGTTTTATATATTTTAAAATAATTTTAATGATCCACTTATTTTTTATTTGTTAAACATTTATTACTATTTAGCTTTAAATATGAACAACATTTTTTCCCATATTTCTCAGCACAAGTACAACCCATCTAAAACCTACAGAAATGACAATAAACCATAGAAATGAACACAACCCAGCATCCCATAATGCCTAGCGCGCGTTGCATGGAGTGCATAGTGGCGTGAGTGCGTCATTTCCGTCAATCTTGAACATGGAGTCGAATGGACTGAAGCTGAATTTCTGGGAGAACGGACCGAAACCCGGTCAGTTTTATTCATTCCCGGGTAGCAGCAGTGCGGCTCCATCATGTGGACCCATCAAACACACACTCAACCCCATGGTAACGGGCACGTCAGTGCTGGGTGTAAAGTTCAAGGGTGGTGTGATCATTGCTGCTGACATGCTCGGCTCCTACGGGTCCCTGGCGCGTTTCCGCAACATCTCCCGACTCATGAAAGTCAACAACACCACCATCCTGGGAGCCTCAGGAGACTACGCTGACTACCAGTACCTTAAACAGATCATTGAGCAGATGGTGATCGATGAGGAGCTTCTTGGAGATGGACACAGCTACACACCTAAAGCCATCCACTCCTGGCTCACACGGGTCATGTACAACCGCCGCAGCAAGATGAACCCCTTGTGGAACACAGTGGTCATTGGTGGATTTTACAATGGAGAGAGCTTTCTCGGTTATGTGGACAAGTTAGGAGTTGCATATGAAGCCCCAACAGTAGCGACAGGATTTGGTGCTTATTTGGCTCAGCCCTTGATGAGGGAGGTGCTGGACAACAAGGTAGAAATCACAAAGGACGAGGCACGAGCACTGATAGAGCGATGCCTTAAAGTGTTGTACTACCGTGACGCCCGCTCATACAACAGGCATGAAATCGCCATTGTAACAGCTGATGGTGTGGAGATTATTGGACCACTGTCTTCTGAAACAAACTGGGACATTGCTCATCTGGTCAGGTAGGCTGAAATTATTCATGATGTTTGCTTACCATTTATGGTTTTATAGACATTTATGGATATTTGTGATGGATCATTAAACTCTGATATGAAGTATCACAACTGTATAGGTTTCTACAAATGTTCGAATTAGTATAATATACACACTTTTGTTTAGGGTCGGTAAGATTTTTAAAAAATGTTATTCTCTTATTCTCACCAATTTTGATTAAAATACAGTAAAAACAGTAATATTGTGAATTTTCATCATTACTCCAGTCTTTAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCAGCTCAAAATACTTTTCTTATTATTATCAATGTTGAAAACAGTTGTGCGGCTTTGTTTTTGTGGAAACCGTGATGCATTGAATAAAAGCAAAACAAAATCTTACTGACCTCCAATCTTTGAATGGTAGTGTATTTTGTTGGATATGTGTGATGTATATCTCAATGTACATATTTAACATCAGTTAAATCATGATTGCTGATTATTCTATTGGCCCACTAACTGCTGTTTGTTTTATTGCAGTGGTTTTGAATGAATCCTGTTCTGCTGAGCCTGTTTTTGTCACATCATCTTTGGATATGCTCTTAGCACCACCAGATCACTATTATATCACTATTAGATTACTGTTAGACTTGTTTCTCGCTCTTTTGTTATTCATAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02736 PSMB4; 20S proteasome subunit beta 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260967 lncRNA upstream 8713 1604324 ~ 1604605 (+) True G229967
TU260786 lncRNA upstream 24288 1588056 ~ 1588342 (+) True G229808
TU260793 lncRNA upstream 27304 1585337 ~ 1586014 (+) True G229815
TU260956 lncRNA upstream 94760 1516335 ~ 1518558 (+) True G229958
TU260742 lncRNA upstream 99314 1513144 ~ 1514004 (+) True G229764
TU260739 lncRNA downstream 29938 1648295 ~ 1648954 (+) True CI01000054_01639395_01647833
TU261513 lncRNA downstream 117485 1735842 ~ 1739334 (+) True G230449
TU261535 lncRNA downstream 149066 1767423 ~ 1807305 (+) False G230462
TU261532 lncRNA downstream 183355 1801712 ~ 1807305 (+) False G230462
TU261533 lncRNA downstream 183355 1801712 ~ 1807305 (+) True G230462
CI01000054_01589927_01595736.mRNA mRNA upstream 17461 1588968 ~ 1595857 (+) False CI01000054_01589927_01595736
CI01000054_01578022_01579167.mRNA mRNA upstream 33962 1578022 ~ 1579356 (+) False CI01000054_01578022_01579167
CI01000054_01568746_01575755.mRNA mRNA upstream 37563 1568746 ~ 1575755 (+) True CI01000054_01568746_01575755
CI01000054_01556797_01565522.mRNA mRNA upstream 47531 1556797 ~ 1565787 (+) True CI01000054_01556797_01565522
CI01000054_01535826_01544666.mRNA mRNA upstream 67768 1535826 ~ 1545550 (+) True CI01000054_01535826_01544666
CI01000054_01634335_01637623.mRNA mRNA downstream 15978 1634335 ~ 1637922 (+) True CI01000054_01634335_01637623
CI01000054_01639395_01647833.mRNA mRNA downstream 21038 1639395 ~ 1648880 (+) False CI01000054_01639395_01647833
CI01000054_01650242_01665628.mRNA mRNA downstream 31885 1650242 ~ 1666115 (+) False CI01000054_01650242_01665628
CI01000054_01706858_01711137.mRNA mRNA downstream 87375 1705732 ~ 1711250 (+) True CI01000054_01706858_01711137
CI01000054_01725792_01726688.mRNA mRNA downstream 107270 1725627 ~ 1726740 (+) False CI01000054_01725792_01726688
TU260728 other upstream 31249 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 206188 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 339568 1266350 ~ 1273750 (+) True G229760
TU260714 other upstream 382989 1227807 ~ 1227900 (+) True G229740
TU260765 other downstream 32603 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU261003 other downstream 107312 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU261855 other downstream 671474 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 1460145 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 2290094 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029558 True 967 mRNA 0.49 7 NC_007130.7 42456922 ~ 42462491 (-)
mexican tetra (Astyanax mexicanus) TU272047 True 948 lncRNA 0.49 7 NC_035919.1 28672884 ~ 28679162 (+)