RNA id: CI01000054_04671351_04681181.mRNA


Basic Information

Item Value
RNA id CI01000054_04671351_04681181.mRNA
length 1664
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01000054_04671351_04681181
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4670151 ~ 4681361 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACCATGTAAACAGTGACTCAAAGTTCCTACAATGAGCAGTTTTCCATTGTTTTAACCAATCCGATGGAAAATATGAGGCTGCTCCTTTGACAAACGTCATAACCAACCAATCAGCTTCAAGAGGCGGGTCTTATTAAATACAGCCCGATCGCTCCATTTGCTAAAGATCCTCTGCGGAATGAGTTATCAATACGGACAGGGTTATCCAGGACCAGGTGGTAACGCTCCCCAACGCCACCCGCCTCCAGGGGCACCTTATGGAGGAGGTCCTGCTGCTGGACAGTATGGTTCACCTTATGGTGGTGCCCCTCCAGGGCAACAGTATGGTGGAGGGGTTCCATATGGGTCTTATGGTCAACCCAGACCAGGAGCACCGTACGGTGGGGGCCAAGCTCCAGGTGGTCCATATGGAGGTTATGGACAACCCCAGAGTGGACCATATAGTCAGCAGGCACCTGCAGGTAACATTCCTCCCGGTGTGAACCCTGAGGCCTACCAGTGGTTTTCTTCTGTGGATACAGATCATAGTGGCTACATTAACGCAAAAGAGCTGAAGCAAGCACTCATGAATTCCAACAACTCCGCTTTCAATGACGAAACCTGCATTATGATGCTCAATATGTTTGACAAAACCAAATCCGGACGCGTAGATGTATTTGGTTTCTCTGCACTGTGGGTGTTTCTGCAGCAGTGGAGGGCAATGTTCCAACAGTTCGACCGGGACCGATCGGGATCAATTAACAGCACTGAGATGCACCAGGCATTATCTCAGATGGGCTACAATCTGAGTCCTCAGTTTATTCAGGAACTGGTGAATCGTTACTCTAAAGGCGGTGTGAACGGAGTTCTCCAGCTGGACCGCTTCATTCAGGTGTGCACGCAGCTCCAGAGCATGACCCAAGCCTTCCGCGAGAAAGACACCAGCATGACTGGCAACGTGAGGCTGAGTTACGAAGACTTCCTGTCTGGTGCCATTACCAGACTGATGTGTATTTCTGAGTCTGCAATCATGTGGCCAGTGATCCTGACTGCCATGCGCACTTATGCACCCTATGTGACCTTCCCAGTGGCCTTTGTGGTGGGAGCTGTTGGATACCACCTTGAGTGGTTTATCAGGGGCACCCCAAATGCCCCAGGAGAAGAGAGGGGCATTGCAGAGCTACGGGAGGATAGAAAATTAGAGGAACTGACCGGGAAGGACAGCACACAGGTCCTTAGCCTGAAGGACAAACTGGAATTCACACCGAGGGCAGTGCTGGAAAGAAACCGACCGGAGAAGAACTAAGTTTTATTAAATGTCATGAAGTCCTGCAAGATTACTATATAATGATGTACAACTTCTCAAACTTTGGACTCATTTGTCACCCTCCACGGCCCCAGGGACGAGAACTTTATCCTACAGTATGCCACCCTAATTACATGGAGTCTAGCTGTAATATTTACCAGGCCTGCTGGTGGAACTTGACTGCTGAGAGAATTTTTTACAACTTTCATTCTTTGAGACTTAATATTCATCTTCTGCCCTTAGGCATGCAGACACATGACTATAAGTCCTAACTTGGAAAGCTTTAATAAGTTTTCCATTCGTGCTCCCTGTCATATGCTCATGAGACTGAAGCTCAAAGAAAGACCACCTTTGTTAAGTTTGTCTGCGTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263281 lncRNA downstream 5307 4665428 ~ 4665667 (-) True G232013
TU263280 lncRNA downstream 5733 4664985 ~ 4665241 (-) True G232012
TU263271 lncRNA downstream 27652 4643046 ~ 4643322 (-) True G232003
TU263231 lncRNA downstream 28844 4607262 ~ 4642130 (-) True G231963
TU263229 lncRNA downstream 68675 4590696 ~ 4602299 (-) True G231961
TU263322 lncRNA upstream 91469 4772830 ~ 4773118 (-) True G232051
TU263348 lncRNA upstream 154495 4835856 ~ 4836109 (-) True G232076
TU263374 lncRNA upstream 221705 4903066 ~ 4917761 (-) True G232102
TU263421 lncRNA upstream 242561 4923922 ~ 5139595 (-) False G232147
TU263425 lncRNA upstream 242561 4923922 ~ 4945774 (-) False G232147
CI01000054_04463229_04486856.mRNA mRNA downstream 184118 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04411682_04448848.mRNA mRNA downstream 222126 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04264074_04331270.mRNA mRNA downstream 339704 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 456594 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_04067809_04076131.mRNA mRNA downstream 594212 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_05292456_05317677.mRNA mRNA upstream 610938 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 659749 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05685529_05686880.mRNA mRNA upstream 1004139 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05711250_05711861.mRNA mRNA upstream 1029261 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05822181_05823458.mRNA mRNA upstream 1140807 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
TU262888 other downstream 688151 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 1607631 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1810401 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 1810401 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 1833292 2837237 ~ 2837682 (-) True G230923
TU263564 other upstream 524838 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 1946721 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2484074 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 4566678 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 4801786 9485215 ~ 9485318 (-) False G235290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028245 True 1450 mRNA 0.42 5 NC_007130.7 37120491 ~ 37134211 (+)