RNA id: TU263271


Basic Information

Item Value
RNA id TU263271
length 277
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G232003
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4643046 ~ 4643322 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTTTTAATAGACAAGGGAACAACTGTTTTGATCTATTTATAGACAGAAAACTAATTGTTGTTATATAGCTCAACACGTTTAGTCTTATTGTTTAAATCTAATTTTCTTGATTTTTTTGCGAGTACCATGCTTTACCATGCCTCAGAGAAAAACACTATTTTGTCAAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGAATTTTCTCCATCATACAATACGTTTTAAAATTAATTGCATGCCATTTATCAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263231 lncRNA downstream 916 4607262 ~ 4642130 (-) True G231963
TU263229 lncRNA downstream 40747 4590696 ~ 4602299 (-) True G231961
TU263262 lncRNA downstream 243049 4399636 ~ 4399997 (-) True G231994
TU263261 lncRNA downstream 243705 4398427 ~ 4399341 (-) True G231993
TU263259 lncRNA downstream 246760 4395977 ~ 4396286 (-) True G231991
TU263280 lncRNA upstream 21663 4664985 ~ 4665241 (-) True G232012
TU263281 lncRNA upstream 22106 4665428 ~ 4665667 (-) True G232013
TU263322 lncRNA upstream 129508 4772830 ~ 4773118 (-) True G232051
TU263348 lncRNA upstream 192534 4835856 ~ 4836109 (-) True G232076
TU263374 lncRNA upstream 259744 4903066 ~ 4917761 (-) True G232102
CI01000054_04463229_04486856.mRNA mRNA downstream 156190 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04411682_04448848.mRNA mRNA downstream 194198 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04264074_04331270.mRNA mRNA downstream 311776 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 428666 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_04067809_04076131.mRNA mRNA downstream 566284 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_04671351_04681181.mRNA mRNA upstream 27652 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_05292456_05317677.mRNA mRNA upstream 648977 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 697788 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05685529_05686880.mRNA mRNA upstream 1042178 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05711250_05711861.mRNA mRNA upstream 1067300 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
TU262888 other downstream 660223 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 1579703 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1782473 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 1782473 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 1805364 2837237 ~ 2837682 (-) True G230923
TU263226 other upstream 26829 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 26950 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 562877 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 1984760 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2522113 7171325 ~ 7171673 (-) True G233891

Expression Profile