Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU311612 |
| length | 903 |
| lncRNA type | read_through |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G274649 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 4590868 ~ 4625092 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU311644 | lncRNA | upstream | 93319 | 4492640 ~ 4497549 (+) | True | G274681 |
| TU311654 | lncRNA | upstream | 100499 | 4487410 ~ 4490369 (+) | True | G274691 |
| TU311842 | lncRNA | upstream | 104516 | 4485687 ~ 4486352 (+) | True | G274860 |
| TU311840 | lncRNA | upstream | 105354 | 4484790 ~ 4485514 (+) | True | G274859 |
| TU311839 | lncRNA | upstream | 106422 | 4483880 ~ 4484446 (+) | True | G274858 |
| TU311877 | lncRNA | downstream | 45497 | 4670589 ~ 4671103 (+) | True | G274893 |
| TU311881 | lncRNA | downstream | 60084 | 4685176 ~ 4696072 (+) | True | G274897 |
| TU311922 | lncRNA | downstream | 141830 | 4766922 ~ 4767140 (+) | True | G274937 |
| TU311923 | lncRNA | downstream | 142440 | 4767532 ~ 4767747 (+) | True | G274938 |
| TU311934 | lncRNA | downstream | 203656 | 4828748 ~ 4831017 (+) | True | G274948 |
| CI01000069_04562461_04568806.mRNA | mRNA | upstream | 21972 | 4562461 ~ 4568896 (+) | True | CI01000069_04562461_04568806 |
| CI01000069_04556116_04558002.mRNA | mRNA | upstream | 32511 | 4555269 ~ 4558357 (+) | False | CI01000069_04556116_04558002 |
| CI01000069_04527086_04527715.mRNA | mRNA | upstream | 63054 | 4527001 ~ 4527814 (+) | True | CI01000069_04527086_04527715 |
| CI01000069_04425809_04438936.mRNA | mRNA | upstream | 151876 | 4423943 ~ 4438992 (+) | False | CI01000069_04425809_04438936 |
| CI01000069_04412903_04419976.mRNA | mRNA | upstream | 169680 | 4411235 ~ 4421188 (+) | False | CI01000069_04412903_04419976 |
| CI01000069_04773976_04774606.mRNA | mRNA | downstream | 148884 | 4773976 ~ 4774959 (+) | True | CI01000069_04773976_04774606 |
| CI01000069_04776672_04785162.mRNA | mRNA | downstream | 150278 | 4775370 ~ 4785432 (+) | True | CI01000069_04776672_04785162 |
| CI01000069_04791495_04792375.mRNA | mRNA | downstream | 166259 | 4791351 ~ 4792680 (+) | True | CI01000069_04791495_04792375 |
| CI01000069_04917103_04918567.mRNA | mRNA | downstream | 292011 | 4917103 ~ 4918901 (+) | True | CI01000069_04917103_04918567 |
| CI01000069_04981836_04982608.mRNA | mRNA | downstream | 355867 | 4980959 ~ 4983096 (+) | True | CI01000069_04981836_04982608 |
| TU311605 | other | upstream | 32388 | 4555309 ~ 4558480 (+) | True | CI01000069_04556116_04558002 |
| TU311582 | other | upstream | 457490 | 4129128 ~ 4133378 (+) | True | G274619 |
| TU311564 | other | upstream | 787367 | 3800023 ~ 3803501 (+) | True | G274603 |
| TU311499 | other | upstream | 952438 | 3636100 ~ 3638430 (+) | True | CI01000069_03636156_03639756 |
| TU311230 | other | upstream | 1695980 | 2892846 ~ 2892971 (+) | True | G274314 |
| TU311947 | other | downstream | 299375 | 4924467 ~ 4926687 (+) | True | G274953 |
| TU312063 | other | downstream | 421135 | 5046227 ~ 5048990 (+) | True | CI01000069_05046565_05048523 |
