RNA id: CI01000071_04737911_04747060.mRNA


Basic Information

Item Value
RNA id CI01000071_04737911_04747060.mRNA
length 3585
RNA type mRNA
GC content 0.43
exon number 19
gene id CI01000071_04737911_04747060
representative False

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4737421 ~ 4748342 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATGGTGATGAATAAAATATGAATAATTCATTTTTTATGTGGGCTCTCTTATGTTTTTGATGACGTCTACTGTGAATCTGCGCATGTCAAGTAGTCTCGTCTCCTCCCTTGACGTTCAGATACACGGGAGCTAGAAGAGATATAATTCTTATCTGTATATATTTAATAATATTATTCCCTTCTGTCATATCGACGTGTTTAATTTAATATTTTATGTTCTTTTAAGGTGTCACAATTGTTATTAGACGTTTAGAGTATTTACAAAAAATGACGAATTATCATATACACTTGTAGCTATAGCTCGTCGGATTGAAGGTAAGATTGTAAACAATCATAATCTTTTGGGCATCATGATTCAGATGCACCCAAAACAGCTCAAACCGTCCGACAACTTACAAACAGATTAGATTTTTTCTTTTGTCTTGGTCCTTCGGCTGGACAAAACCTTGTTAGATATAAACTGAATGTCATGGTTTCCTGGAGCCATGTCTTGTAAATCTAAAGTTGCTCCCAGTGTTGATTTTGACCACAGCTGCTCTGACAGTGTTGAGTATTTGACACTCAACTTCGGGCCTTTTGAGACTGTCCACCGCTGGAGGAGGCTGCCACCATGTGATGAGTTTGTGGGTGCAAGGCGTAGCAAACACACTGTCGTGGCATACAGGGATGCCATCTATGTTTTTGGAGGAGACAATGGCAAGAACATGCTTAATGACTTGTTGCGGTTTGACGTGAAGGACTGCTCCTGGTGTCGGGCGTTTACTACTGGCACCCCACCAGCTCCAAGATATCACCATTCTGCAGTTGTGTATGGAAGCAGCATGTTTGTGTTTGGTGGATACACTGGAGACATCTATTCAAACTCTAACTTGAAAAACAAAAATGATCTATTTGAGTACAAGTTTGCTACCGGGCAATGGACAGAATGGAAGGTGGAGGGACGGCTGAATGACATGTGGACCATCAGTCTTCAGGATCGTGAGCAGGCATGCTGGGAAGAGATTGAACAAAGCGGTGAAATCCCACCGTCCTGTTGTAACTTCCCAGTAGCCGTATGTCGGGATAAGATGTTTGTCTTCTCTGGTCAGAGTGGAGCAAAGATCACCAACAACCTCTTTCAGTTTGAATTCAAAGGCCACATATGGACCCGTATCCCAACTGAGCACTTACTGCGTGGCTCCCCTCCGCCCCCTCAGAGACGCTATGGACACACCATGGTGGCGTTTGATCGTCACCTGTATGTGTTTGGAGGAGCAGCAGACAACACTCTACCCAATGAACTGCACTGCTATGACGTGGACTCACAGACCTGGGAGGTCATTCAGCCCAGCACCGACAGCGAGATGCCAAGTGGAAGGCTGTTCCATGCAGCGGCTGTTATCCATGATGCCATGTACATCTTTGGAGGGACTGTGGACAATAATGTACGCAGTGGAGAAATGTACAGATTTCAGTTTTCTTGCTATCCAAAGTGCACACTTCATGAGGACTATGGCAAACTGTGGGAAAACCGTCAGTTCTGTGATGTAGAGTTTATCTTGGGGGAGAGGGAGGAGAAGGTCCTGGGTCATATTGCCATAGTAACAGCTCGCTGTAAGTGGCTCCGAAAGAAGATTCTACAGGCGAGAGATCGACAGAAACAGAAGAGTAAACTTGAATGCAATGAGGAGAGTGAGGAGTCTGGCTCAGGCAGTCAGAAGGACAACTCTGGAAGGTCCTCAAGGGGTCTTCCTTTATTGGAAGTGTCAATCAGAGAGGCAGACGCTCAACCATTTGAGGTTTTGATGCAGTTCCTGTACACAGACAAGATACAGTACCCACGTAGAGGTCATGTGCAGGATGTGCTGCTGATAATGGACGTTTATAAACTTGCTTTGAGTTTTAAACTGTCCAGACTGGAGCAGCTCTGTGTTCAGTACATTGAGGCATCGGTCGATCTGCAGAACGTCCTGAGTGTGTGTGAAAACGCAAACAAACTTCAGCTGGACCAGCTTAAGGAACATTGCCTGAACTTTGTGGTCAAGGAGAGTCACTTTAACCAGGTCATCATGACTAAAGAGTTTGAGCACCTGTCCACTCCGCTGATCGTGGAGATAGTGAGACGCAAACAGCAGCCTCCTCCAAGAGTCTATTCGGATCAGCCGGTGGACATAGGCACATCTCTGGTGCAGGACATGAAGGCTTATCTGGAGGGGGCGGGCCATGAGTTTTGTGACATCATCCTTTTGCTAGATGGTCATCCGCGCCCTGCACATAAGGCCATACTTGCTGCTCGCTCCAGTTATTTTGAGGCCATGTTCCGCTCCTTCATGCCAGAGGATGGGCAGGTGAACATTTCAATAGGTGAAATGGTTCCTAGTACACAGGCCTTTGAGTCTATGCTGCGCTACATTTATTATGGGGATGTCAACATGCCTCCAGAGGACTCACTGTATCCTCATTACTGCTTCATATATCTGTTTGCAGCACCTTATTACTACGGTTTCTCCAACAATAGACTGCAGGCCTACTGCAAGCAAAATCTGGAGATGAACGTTACTGTAGAAAATGTCTTGCAGATCTTGGAGGCGGCTGATAAGACTCAAGCTCTGGACATGAAGAAACACTGCCTGCATATTATAGTCCATCAGTTCACCAAGGTGTCCAAGCTCCCCAACTTGCGATCGCTCAGTCAACCACTGCTGTTGGACATCATTGACTCGCTGGCATCCCACATATCAGACAAACAGTGCACTGAGATGAGCTCTGATATATAGTCTATCCTCCCCTTTCACGTCCCATCCAATACTTTATGAACTTTTTCATTAATGCTTCCGCTCCATTTCCTTCCCTCTTCATCCAGCACCTCCTCCCAACCCTTATAATTCTGCTTCACACCCCCCGTTCGCTGCGTCACATTCCTCTGGATTTTATTTATCAAATTGTGTTTGAGAGAGAATTGTGTTTTAATGTGCACACATTTTGGGCAAATACCCTTAATTTGGTAGTGCACATCAAATCAGTTGACGGCCCACAACGTTGTTTCATTAGACATACAATTAAAGGGATAGTTTACCCAAAAATGAAAATTCTGTCATCATTTACTCACCCTCAAGTTGTTCCAAACCTTTATAAATTTCTTTGTTCTGTTGAACACATAGGAAGATATTTTGAAGAATGTGGGGAAACTGAACAGTTTTGGGGCACCATTGAGTTCCATAGTATTTTTTTTTTCCTACTATGGAAGTCAATGGTGCCCCAAAGCAGCCTGGTTACAAACATTCTTCAAAATATCTTCCTTTGTGTTCAGCAGAACAAAGAAATTTATACAGGTTTGGAACAACTTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAGTGTCCCACATAATGAAAGCTTTGTAAACACCACTCCTATTAGGATAAATTTCACAAAAACATGTCAAGGTGACAAAATCCAAAGAAAGAAATAGAAATGTTATATTGCATAAAGAAAATGAACTCATTTTATGGCCACCCATTTTCTTTTTTGCCTTTTTAATGACAATTATGAACATTTTAGTGCTAAATTATCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321172 lncRNA upstream 18499 4715415 ~ 4718922 (+) True G283401
TU320540 lncRNA upstream 33513 4697875 ~ 4703908 (+) True G282813
TU320565 lncRNA upstream 40808 4692136 ~ 4696613 (+) True G282838
TU320790 lncRNA upstream 49134 4688082 ~ 4688287 (+) True G283051
TU320768 lncRNA upstream 106423 4630548 ~ 4630998 (+) True G283029
TU321218 lncRNA downstream 70072 4817956 ~ 4818229 (+) True G283440
TU321220 lncRNA downstream 74889 4822773 ~ 4823788 (+) True G283442
TU321199 lncRNA downstream 158737 4906621 ~ 4906962 (+) True G283421
TU321201 lncRNA downstream 215054 4962938 ~ 4965441 (+) True G283423
TU321200 lncRNA downstream 221184 4969068 ~ 4970189 (+) True G283422
CI01000071_04706607_04712020.mRNA mRNA upstream 25198 4706607 ~ 4712223 (+) True CI01000071_04706607_04712020
CI01000071_04589416_04602399.mRNA mRNA upstream 134926 4588324 ~ 4602495 (+) True CI01000071_04589416_04602399
CI01000071_04584728_04585430.mRNA mRNA upstream 151700 4584728 ~ 4585721 (+) True CI01000071_04584728_04585430
CI01000071_04534337_04569325.mRNA mRNA upstream 168096 4534337 ~ 4569325 (+) True CI01000071_04534337_04569325
CI01000071_04518557_04528364.mRNA mRNA upstream 208969 4518557 ~ 4528452 (+) True CI01000071_04518557_04528364
CI01000071_04751375_04752037.mRNA mRNA downstream 3285 4751169 ~ 4752442 (+) True CI01000071_04751375_04752037
CI01000071_04780189_04798898.mRNA mRNA downstream 32305 4780189 ~ 4798898 (+) True CI01000071_04780189_04798898
CI01000071_04825708_04831021.mRNA mRNA downstream 77824 4825708 ~ 4831067 (+) True CI01000071_04825708_04831021
CI01000071_04834539_04839129.mRNA mRNA downstream 86442 4834326 ~ 4839355 (+) True CI01000071_04834539_04839129
CI01000071_04851502_04865548.mRNA mRNA downstream 103618 4851502 ~ 4865548 (+) True CI01000071_04851502_04865548
TU319744 other upstream 1680890 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 1908817 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3359751 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 3815325 905217 ~ 922096 (+) True G280443
TU318001 other upstream 3934104 799775 ~ 799876 (+) True G280464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060053 False 3504 mRNA 0.44 20 NC_007116.7 12724046 ~ 12743212 (-)
bowfin (Amia calva) AMCG00018692 True 5498 mRNA 0.44 20 CM030135.1 18646519 ~ 18659398 (+)