RNA id: CI01000072_01266686_01269274.mRNA


Basic Information

Item Value
RNA id CI01000072_01266686_01269274.mRNA
length 2226
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000072_01266686_01269274
representative False

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1265981 ~ 1270282 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCTACTCTGGAGTTGCCTGTCTCTCTTGCTTTAGCTCATGTCCTCTATTTCCCACAGCGGCCGAGTCACCCAGCACAGATTTATAGCATCCTGTAGAGAAATACAGAATCAAGGGACAGGGAGAGAGACAGCGCAATTAGAGAGAGAGAAAGAGAGAGATACAGAGAGGAACAGCATGTGAAGAATGCGACAGAGAAAGGAAGAAGAAAATCCTATCAACAAGTAGGACCAGGGTCAAATATGTATTGACTGAGCCCGTTCCTCCTTTTGTTTCCACAATCATATAGTTCCACAATCAAAACGGATCTCTGCCAAGCAAACAGTCAGGATAACACTACAGTGCGGAATATTTCTCCAGCCTGCCAAAAACAGACCCAGCCTGAAAAGAAGAGTCCGTATAATGGACTGAATCACTGAATCAGTTATTGTGACTAAAAATGAATCAAAAAAACTTTAGAGTGTTATTTGTCAATTTTGCAAGCAACAGCAGTAAAATGCACATTTGTAAGCTTGAAAACTAAAATCAATCTTGGTGAAACTAAAATCAATCTTTACTTTCATATAACAAATTCATATATACAACAGAATTACACTGAAATAAATAATATTGAAATTTTTATTATTTTTTTCCCGCACATTAAAATGAGCTTTTAGTTAAATGAATATTAAAATAAAGGGGTCGGGATGATGCTAAACCAATCCAGATGAAAACTTTGTATAGGAAGAAAATATCACTGTGTTATCTTGTGTTCACCAATGAGAACACTTAGAATATTTTTGATTAATTCTGGAAAATTTAGTGTAAAACTTTCCAAACACAAAGGACTTCTATAGACTCTCCATTAGAAAAGAGCAAAAGCTTAAATAATGATAAAGTCTGAAAATCTTATGGATGGCAACAGCTGCTAAGGTAGAATTGGTCAATAATGTTTTTAAAGCATGATGAGGGTAAAGTGTCAAGACAGAGCGATATAAAGAGAAAAGGATCAAGGAGCATGAGCTGAGCATGAGCAGCAAGAGAACAGAGCGACAGATGGAGAGAAAGGAGTTAAATAGACTGAGATCGAAAGAGATAGAGAGAGCGCTGTTCAGAACGCAGATATGCATTTATAGTGGAGATAAACATGAACGTGTTGCCAAAAATATCACCCAGGTTGACAGTGGCCGCAGGCTGCCTTTAACTCAGCTATCGGTTGAGCTCATGCAGAGACTCAGCAGAGAAGTGAAGAGTATAACTCAACCGAAGAGAACTAGAGATGATATCAATGAAATGTTGCTAAGATCAAATAGGGAACCAAAAATGCAAAAAAGGAAACACGCCGAAACTGGATTGACAACAGTGCAGAACAAGAATTACAGACTGTCGCCTTACTGTGAGATGCATCACAATGAGTTTGGTGCCACTGCCACATGGGAAAAATGCGGTTTCAGGAAGCGCAGAGCGGACATTTCTGACCATCTGCTTGATGGGGAACACACCTGGCTGTACCGAATCCCAGATGCAGAATGCAAAAAATAACAGATTCCAGCATTTCGTCAAATTTGCTATGGACAACAATATGTTCAGTGGAAATACATGTAACAATCTGACCCCAGCACTGACCCTCTCAGATAAGAGAATATGAAGGAAAAACATGCACACACATACAAATTCACTATAATAAGCTGAATTCCACCCAAATTCAAGTCTGTGTATGTGAGCATGTGATTGAAGTTACTGCCGCGGAGCATCTGTAGTCTCTGCTGTGTGTACGTTGACATGCTGTGTGTAGACAAGTCTGGGCACCCTCGGTGCACAACTGACGAGTCCAGGTCTAACACCTGTCCACCACCATCACACTACAGAAATCAACATCAACCTGGGAGGACACATCACAACAGGTGTGTAGTGTTATCGCTGAACATGCCCATTTATTCAGGCTAGATGCATCAACAGCATTCATCTTCCATTGTAGGATAGAAACGTGTTAGCCGCTAGAGATTCTGCTGTAACATTTGTACTGAGGTACATTCTCAGTGTGATTTAGTCTATTCTGTCAACTAGAATAGACTAAATCATGGTATGACTAAAGATTTTGGTCATACCAAATACTCCAATTAATACTCCCAATAACAAAAAATGTGTTTGATATTTCTAAGTTAGCAAATCGTATTTAGCTAGTAAAAACATGAAAATATGATTTTGTTCAGTATTTTCATTTTGTTAGCCTAATGTAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323638 lncRNA downstream 76958 1188461 ~ 1189023 (-) False G285543
TU323639 lncRNA downstream 76958 1188461 ~ 1189023 (-) True G285543
TU323595 lncRNA downstream 99637 1166138 ~ 1166344 (-) True G285505
TU323593 lncRNA downstream 102893 1162818 ~ 1163088 (-) True G285503
TU323539 lncRNA downstream 110141 1150899 ~ 1155840 (-) True G285453
TU323716 lncRNA upstream 33230 1303512 ~ 1313705 (-) True G285618
TU323604 lncRNA upstream 53578 1323860 ~ 1325111 (-) True G285513
TU323627 lncRNA upstream 55761 1326043 ~ 1326276 (-) True G285536
TU323723 lncRNA upstream 57633 1327915 ~ 1328182 (-) True G285624
TU323726 lncRNA upstream 62587 1332869 ~ 1333140 (-) True G285627
CI01000072_01134551_01143259.mRNA mRNA downstream 122722 1134551 ~ 1143259 (-) True CI01000072_01134551_01143259
CI01000072_01126495_01134364.mRNA mRNA downstream 131617 1126463 ~ 1134364 (-) True CI01000072_01126495_01134364
CI01000072_00894580_01108625.mRNA mRNA downstream 157356 894580 ~ 1108625 (-) True CI01000072_00894580_01108625
CI01000072_00859483_00865880.mRNA mRNA downstream 400101 859189 ~ 865880 (-) True CI01000072_00859483_00865880
CI01000072_00824625_00842268.mRNA mRNA downstream 423108 823094 ~ 842873 (-) True CI01000072_00824625_00842268
CI01000072_01367142_01373874.mRNA mRNA upstream 96123 1366405 ~ 1373874 (-) True CI01000072_01367142_01373874
CI01000072_01379641_01387648.mRNA mRNA upstream 108062 1378344 ~ 1387648 (-) True CI01000072_01379641_01387648
CI01000072_01508008_01512181.mRNA mRNA upstream 237376 1507658 ~ 1512181 (-) True CI01000072_01508008_01512181
CI01000072_01596829_01610605.mRNA mRNA upstream 326501 1596783 ~ 1610860 (-) False CI01000072_01596829_01610605
CI01000072_01792476_01805286.mRNA mRNA upstream 521791 1792073 ~ 1805712 (-) True CI01000072_01792476_01805286
TU322054 other downstream 981702 283623 ~ 283764 (-) True G284127
TU323625 other upstream 65225 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 323829 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 323829 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 735269 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 897766 2168048 ~ 2170658 (-) True G285752

Expression Profile