RNA id: CI01000072_01596829_01610605.mRNA


Basic Information

Item Value
RNA id CI01000072_01596829_01610605.mRNA
length 847
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000072_01596829_01610605
representative False

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1594111 ~ 1627895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTATTTCTTAGTTGTATTGTTTTATTGTTTTTGTTTTTTGAGAAAAAAAGAGAAAAAAATGGCAAGCAAACTGGCTCATCATTAATTTCTTTGTGTATGTATTTATCTTCAAAGATACTCACTGCAAAAAAACAAAACAAAACAAAAGGAACAGCATTTCTCTGTTGTTGTGCCTCTTGTAGTGGAGTGGCAGTGATGATCTGCAGTTTTGACTGTACAGATGTTACTATGGAAATTTCCCAGCGGGGTCACAATGGGATTCATCTCTTCAAGGAATCCGTCTGTTGGATGTCAAGTGATTGTGTTTGCTTGCTCATTTAACATTGTCAACTTGCGTTCCCCAGCCCTCGTTATGTTCGCTGTGGGCCGAGCGTCCGCACTTGTCAGGCTCGAGAGCTCATTAGATACATTTGGCCTTTTTCACGGATGCTGCTCTCATGGTCCAAGCACCGTAGATAAACAGTGGGCCGTGCCAGATCTTGGGGATTTTTCAGCGAAACGCATTGCACACTTTCTATCACACAACCCCAACATACAACATGTTACGCTCTCTGGACAGTTCCACACCCACCGACCGGCACTGCACATTCACACTTCCTTACAAACCCAACCCTATAATGCACATCCCTCAGGGCCTGGATCATCATACAACATACTCAATTTAAAAGAAGTAGCTTACACCCCATTCAGAACAAGTTCCCAAAAGGGTCTCCATATGCTGCTGATCATCAGCACACACACTTTCTCCCGCCCTTTCTTTAAAATTTCCGATGCTCGACTTGGCCTTGCCGCCGACTGACAGCCATGCATGCAGAGAAATGAGAGAGAATGGAGGTAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323612 lncRNA downstream 158980 1413878 ~ 1437803 (-) True G285521
TU323598 lncRNA downstream 183915 1411299 ~ 1412868 (-) True G285507
TU323605 lncRNA downstream 190579 1402207 ~ 1406204 (-) True G285514
TU323596 lncRNA downstream 190730 1398128 ~ 1406053 (-) True G285506
TU323622 lncRNA downstream 230574 1361073 ~ 1366209 (-) True G285531
TU323817 lncRNA upstream 47314 1658174 ~ 1668359 (-) False G285698
TU323818 lncRNA upstream 47314 1658174 ~ 1668359 (-) True G285698
TU323809 lncRNA upstream 65036 1675896 ~ 1686044 (-) True G285696
TU323804 lncRNA upstream 80958 1691818 ~ 1740592 (-) False G285694
TU323805 lncRNA upstream 80958 1691818 ~ 1704923 (-) False G285694
CI01000072_01508008_01512181.mRNA mRNA downstream 84602 1507658 ~ 1512181 (-) True CI01000072_01508008_01512181
CI01000072_01379641_01387648.mRNA mRNA downstream 209135 1378344 ~ 1387648 (-) True CI01000072_01379641_01387648
CI01000072_01367142_01373874.mRNA mRNA downstream 222909 1366405 ~ 1373874 (-) True CI01000072_01367142_01373874
CI01000072_01266686_01269274.mRNA mRNA downstream 326501 1265981 ~ 1270282 (-) False CI01000072_01266686_01269274
CI01000072_01134551_01143259.mRNA mRNA downstream 453524 1134551 ~ 1143259 (-) True CI01000072_01134551_01143259
CI01000072_01792476_01805286.mRNA mRNA upstream 181213 1792073 ~ 1805712 (-) True CI01000072_01792476_01805286
CI01000072_01816759_01818078.mRNA mRNA upstream 205864 1816724 ~ 1818345 (-) True CI01000072_01816759_01818078
CI01000072_01826415_01834432.mRNA mRNA upstream 215465 1826325 ~ 1834447 (-) True CI01000072_01826415_01834432
CI01000072_01854562_01862622.mRNA mRNA upstream 243474 1854334 ~ 1862688 (-) True CI01000072_01854562_01862622
CI01000072_01901888_01919435.mRNA mRNA upstream 290064 1900924 ~ 1919473 (-) False CI01000072_01901888_01919435
TU323625 other downstream 241851 1335507 ~ 1354932 (-) True G285534
TU322054 other downstream 1312504 283623 ~ 283764 (-) True G284127
TU323892 other upstream 394691 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 557188 2168048 ~ 2170658 (-) True G285752
TU324139 other upstream 1382909 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 2359410 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 2359410 3970270 ~ 3976067 (-) False G286205