RNA id: CI01000072_01134551_01143259.mRNA


Basic Information

Item Value
RNA id CI01000072_01134551_01143259.mRNA
length 1775
RNA type mRNA
GC content 0.51
exon number 8
gene id CI01000072_01134551_01143259
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1134551 ~ 1143259 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGATGGGATATTTTCATGTCGAGCCAGTATTTATTATGACCAAGGCGGTAGGAAATACATGGAGGACTTAATGACGATGAAGCAGGAGGATGAGCCGAGTGAGGATGAACTGGACGCCGCCGAACGTGGCGAGATCGAGGCACCAGCAAAAGACCAAAACCCCGACGCTTCAATCCAAGAATCCATTCCTGGATCTATCACTGTTACGTATGTTCAAAATGATGAGCCTAGTTCTACTCTTCAGCAGGCGTCGATGCCCTCGTCTCGCTCGTCCAAACACACCCCTGGTCCGCGGGCTGTGGCTATGTTCGCCGTGTTCGACGGACACGGGGGTCCGGACGCCGCGCGCTTTGCTCGCGACCATCTGTGGGACCACATCAAAAAACAAAGAGGCTTTTGGTCAAAAGACGACGACGAGGTGTGCGCGGCTTTGCGAAAGGGATTCATCTCTTGTCACCATGCCATGTGGAAGAAATTACCGGAATGGCCAAAGACGGTTACAGGACTTCCTAGCACATCGGGCACAACTGCAAGTATTGTCGTAATACGACGTGACCGTATGTATGTTGCCCACGTCGGGGACTCAGCAGTAGTGTTGGGGGTGCAGGATCACCCCTCTGACGAGTTGATTCGAGCCGTGGAAATTACGCAGGACCATAAACCTGACCTCCCGAAGGAAAGGGAGAGAATAGAGGGGCTCGGTGGCAGTGGTCTGACTGGTTTTTGTTTATGCAACCAGAGCTTTAAAATTGGGACATTACCAGACACGCTCTCATTGCTCTGTGTCATTAAAAAGTCTGGAGTCAATAGGGTTGTGTGGAAGAGACCCAGACTCACCCACAATGGGCCAGTGAGAAGGAGCACCGTCATCGATCAGATCCCATTTTTGGCTGTGGCCCGAGCTCTTGGTGATCTGTGGAGTTACGACTTCTACAGCGGAGAGTTTGTAGTGTCACCAGAGCCTGATACTGCTGTTATCAAGCTAGATTTAAAGCAGCACCGTTACATCATCTTAGGCAGTGATGGGTTATGGAACATGGTATCACCGCAGGAGGCTGTGTCTATTTGTCAGGACAATGACAATGCCAAGGCGAAGAACCAAAAGGATAATGTTTCAAATGCCGTTCTGCTTGTGAACCATGCCTTACTGAGATGGCGTCAACGCATGCTCCGTGCTGATAATACCAGTGCCATTGTTATCTGTTTGGAGCCGTTCGGGACATCCAGTGAGTGCTTGCCACCTTATGAGATTGTGTATAATCTACAGGGACCAAAGTGTGGCTCTGTTCCCGAATCTTGCACTGACTCTTTGCCGACTCAGGTTCCTGACACTCAAGTACAGCACATCCCAGAGAAGAAAAATGGCAGCTGTGACACAAGCACGATATTTGAATCATCTCCTGAAAGCCTTACAAACTATGAGGACCTGCCTTGTAATGACTCACTGGAAAATGAGGCCAATTGTGATAGAGTGCCTACAGGCAAACGGGTGCTAGAGGATTCCTCCTCACCTGTGCTGAAGAAACCCCGTCTTAGTTTGTCCCAGTCCCCTCTTAAAGAGTCCTTATGTACAACCTCACAGAAACCGAGCGTACAGTCCTCTGCGAGGAGCGACGGTGGAGACAGTGGTCAGAAACAGTCTGAAAATGTCCAGACGCTGATTCAGCAGCATGGGAAGACTACTGATACTGAGTGGTTGGCCATGGCGTCTGACTCCCCGCGCAGACCGAGCCGCTGTGCTGGTGGGGTTGTGGTTCGAGCACAGGCTGCAAC

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K10147 PPM1D, WIP1; protein phosphatase 1D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323543 lncRNA downstream 127967 1001851 ~ 1006584 (-) True G285454
TU323572 lncRNA downstream 313519 820815 ~ 821032 (-) True G285482
TU323561 lncRNA downstream 331120 803119 ~ 803431 (-) True G285471
TU322234 lncRNA downstream 383735 750400 ~ 750816 (-) True G284299
TU322230 lncRNA downstream 391514 742732 ~ 743037 (-) True G284295
TU323591 lncRNA upstream 808 1144067 ~ 1144334 (-) True G285501
TU323545 lncRNA upstream 5319 1148578 ~ 1148950 (-) True G285455
TU323539 lncRNA upstream 7640 1150899 ~ 1155840 (-) True G285453
TU323593 lncRNA upstream 19559 1162818 ~ 1163088 (-) True G285503
TU323595 lncRNA upstream 22879 1166138 ~ 1166344 (-) True G285505
CI01000072_01126495_01134364.mRNA mRNA downstream 187 1126463 ~ 1134364 (-) True CI01000072_01126495_01134364
CI01000072_00894580_01108625.mRNA mRNA downstream 25926 894580 ~ 1108625 (-) True CI01000072_00894580_01108625
CI01000072_00859483_00865880.mRNA mRNA downstream 268671 859189 ~ 865880 (-) True CI01000072_00859483_00865880
CI01000072_00824625_00842268.mRNA mRNA downstream 291678 823094 ~ 842873 (-) True CI01000072_00824625_00842268
CI01000072_00812929_00817837.mRNA mRNA downstream 316683 812667 ~ 817868 (-) True CI01000072_00812929_00817837
CI01000072_01266686_01269274.mRNA mRNA upstream 122722 1265981 ~ 1270282 (-) False CI01000072_01266686_01269274
CI01000072_01367142_01373874.mRNA mRNA upstream 223146 1366405 ~ 1373874 (-) True CI01000072_01367142_01373874
CI01000072_01379641_01387648.mRNA mRNA upstream 235085 1378344 ~ 1387648 (-) True CI01000072_01379641_01387648
CI01000072_01508008_01512181.mRNA mRNA upstream 364399 1507658 ~ 1512181 (-) True CI01000072_01508008_01512181
CI01000072_01596829_01610605.mRNA mRNA upstream 453524 1596783 ~ 1610860 (-) False CI01000072_01596829_01610605
TU322054 other downstream 850272 283623 ~ 283764 (-) True G284127
TU323625 other upstream 192248 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 450852 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 450852 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 862292 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 1024789 2168048 ~ 2170658 (-) True G285752

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017083 True 2474 mRNA 0.45 6 NC_007126.7 26933196 ~ 26939404 (+)