RNA id: CI01000072_00812929_00817837.mRNA


Basic Information

Item Value
RNA id CI01000072_00812929_00817837.mRNA
length 899
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000072_00812929_00817837
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 812667 ~ 817868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAACATAATTTGAATTTGCCAAAGGACAAATGGACTTTCCAGGGGCCACTGGCCAAAACCGATGCCAACTTGTGGCGCTAGGTAATGAGGGAAGACCAAGCCAAGCAAAGCAGATAAAATGGCAATTCACACAGACATCTACATTCAGGTTCGGAATGAAGGGTGATAACACCTTTAACCTGTCGTGCTTGGACACCACTGAAACACTGCAGGAATGGTGGGCATGTGAAGAACGCATGAAAGGCACTGTTTCCATATTACTGACCCAACTAACAAGGAAAACATTCTTACATGCTGTCATACTGTCAATTCTCAAAGAGGTCATATTCTTAGTGACCTTTGTTTATGGTTCATGTCTATATCTTGTCATTTTCCAGACAATTTCCAACAAGGCAATGCATGCCAGGTCAGCTTCTGCCCCTATTGGTCTTTGTGCTGTGTGTTTGTTTATGCACTGTGAGCCCAACAGTGAGAGAGCACACAACTCTTTTGTTCAAGTGACAGCATGTGTGAGAAGGAGAATCCTTAGGCTTTCACTGTTCTTTAGCAGTAACACCCTCACTGCCATTAGCAATCTGATTGCTAATATAAAACATCACTCTAAACTTCGCGTTTTAAAGTGGATCAACTGTTAGTCAGGTAAATATTGGCTGTCAGCAATTAAATTTTTGTTCATGAGCAAGATTAAGTGGAACTATGAAGCCACAGGCTATTGTGCAGAGGGCAGCAGAGGAGGAGACATCCATGACATGGAATTGCGTGACTCACAATCATTTTTATTCCTTTGTCATCAGAAAAACAATAACTGTTCGCTGTTTAAAATCAAAGATGAGCAAACATGCCTTGCCGTGTGAAGGAAACACTGCTCCTGATCTCACCTCTACTGTCACTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323561 lncRNA downstream 9236 803119 ~ 803431 (-) True G285471
TU322234 lncRNA downstream 61851 750400 ~ 750816 (-) True G284299
TU322230 lncRNA downstream 69630 742732 ~ 743037 (-) True G284295
TU322214 lncRNA downstream 96880 712486 ~ 715787 (-) True G284279
TU322206 lncRNA downstream 115253 697150 ~ 697414 (-) True G284272
TU323572 lncRNA upstream 2947 820815 ~ 821032 (-) True G285482
TU323543 lncRNA upstream 183983 1001851 ~ 1006584 (-) True G285454
TU323591 lncRNA upstream 326199 1144067 ~ 1144334 (-) True G285501
TU323545 lncRNA upstream 330710 1148578 ~ 1148950 (-) True G285455
TU323539 lncRNA upstream 333031 1150899 ~ 1155840 (-) True G285453
CI01000072_00672699_00753165.mRNA mRNA downstream 59396 672226 ~ 753271 (-) True CI01000072_00672699_00753165
CI01000072_00395219_00398674.mRNA mRNA downstream 413923 395196 ~ 398744 (-) True CI01000072_00395219_00398674
CI01000072_00390666_00393574.mRNA mRNA downstream 418755 390454 ~ 393912 (-) True CI01000072_00390666_00393574
CI01000072_00384630_00389183.mRNA mRNA downstream 423346 383909 ~ 389321 (-) True CI01000072_00384630_00389183
CI01000072_00353460_00366394.mRNA mRNA downstream 446084 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00824625_00842268.mRNA mRNA upstream 5226 823094 ~ 842873 (-) True CI01000072_00824625_00842268
CI01000072_00859483_00865880.mRNA mRNA upstream 41321 859189 ~ 865880 (-) True CI01000072_00859483_00865880
CI01000072_00894580_01108625.mRNA mRNA upstream 76712 894580 ~ 1108625 (-) True CI01000072_00894580_01108625
CI01000072_01126495_01134364.mRNA mRNA upstream 308595 1126463 ~ 1134364 (-) True CI01000072_01126495_01134364
CI01000072_01134551_01143259.mRNA mRNA upstream 316683 1134551 ~ 1143259 (-) True CI01000072_01134551_01143259
TU322054 other downstream 528388 283623 ~ 283764 (-) True G284127
TU323625 other upstream 517639 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 776243 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 776243 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1187683 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 1350180 2168048 ~ 2170658 (-) True G285752

Expression Profile