RNA id: CI01000072_00672699_00753165.mRNA


Basic Information

Item Value
RNA id CI01000072_00672699_00753165.mRNA
length 3471
RNA type mRNA
GC content 0.50
exon number 15
gene id CI01000072_00672699_00753165
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 672226 ~ 753271 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGACACAAAGCGGCATTTCCTCTGAGGATTGAGTGAGGGAGTGAAGGAGGGAGGAAGGGAGGGGGCGAGCGGAGTGAACGGCCAGGCTCAATCACGACCACGCTGATGGGGAGGGAGAAGGAGGCAGCTGGGTTCCCGCTCAGGCCTTCAATTTCCTCCACAGTCCAGCCACTCAAGTGTGTAATTACTATGGGGTGTCATGAAGGTGCGATTCCTTCTCCTTGTAACACTCACCCCCCTTCTTGCCTGCACCCCCCAACGGCTCTCAGCTCCCCACGTCCCCTGCACTCACCCCCAGTAACACCCCCATCTCATTTCTGCCCCAGCCCCCCACCCCAACATGTGCCATCCTATTTTCCCAGTCTCCACCTAGTCGCCTGCCCTTTTGCAACTGCAGCGGCATTTACTGACAAAGACCAGAGTGATCATCAGTTTACTGATAAACACGCTAAACACATAAACACGGCTAGCCTCTGCTCCCTGGCTGCCTTGTACCCAGCATGCAACGCATGGACAGATATGGGGTTTGAGGAAACATCATGCAGCATTAGACTGTCCATGTGTCCTTCATTAAGAGGGAAATGGGAGTTCTGGGAAGGTGTCACTGCTCCAGATCTTCATCTCTTGTTCCTCCACTCCCACATGTGCACAGTTTGGCAGGATGCTAGGACCATAGTGACAGGTCTGAAGGAGGCAGAGAAGGATGAATCTGCTCTCAGAGTTTATGTCTTCCTGCGAGGAGCTGAAACTGCACATGGCAAAGGAAAGCAGAGGACGGGTTCTGAGGGCCAGATTAGGTCATCAGCTACCTACAGTGTCGCCATCCCATCCTACTGCTGTTACGACACTAAAGGAGTCACTCACAGTTATATGAACCATATTATCTCTAGAAGAACACAGCAGGCCCCGTCACTGCTCACAGTGCATTTGTCTTCGTATGTGGTCCGCTTTGCAACACTCCTCTACACAGTGTTGAAGTACTTTAGAGCAAATTCATTTTACCTTTATTATGTTTCTCTTACACATCCACTTTTCATGGTGACACCTCTCATGGTGGACAGGGGTGGCAGATTCTATCCTGCAGCCAGTCAGCTGCTTTGCTCCTGGAAGCTGCCCAGATGCCCTCTGAACCCTGGCAAGGTGGCAAAGCCTTCACATAGGGTGGGCGGAGTGCAGCAGGTTGCCCAGGCTTATCTCAGAAGAGTGGATTTATGCAGGGGGAAGACACTGAGTGCTCCTGATGCATTGCTTTGGCAAGAAGCTCCTCATCTGTCCTATTATTCCTGCCCCCCTCCTGCAGTCTCTCCTTCAGAATTCAAGTACCTGTGTCTCCTTTTAGTGAATGTCAGCACCAAAATCAGTGTAGAAGCTGAGGAGCAAACCGGGGCTGATGCTGGGCATTTGAGCGGTGGCGTGGCTGATATGGTTAGACAGGGCATGGGGCGCCATGCCAAGACAGTGCCAGTGTCTACCTCTGACCTGCTGGCACTTGATCAGCACGCTCGTGCCATGCAGCCTGCTAACACCCCACTGTACGCTGCGGGACACAACAGCAAGCCCTGTCCTGCACCATTGTGTAGAGAGGACAATAACACACTGGGTCTCTGCAGGTTCTTTGTCACCTCACCTGTCGATACTCTGGAGGGATGGTGTGTCAAGCTGGGAAGGGTACCTTACAACTTACGGCAGATGCTGGCAGAGCGCCCTGGTCATGATGCTGTCCAACAGCTCAACCGGCCCCACTGCCCATTCATCACTCTCCATTCGGGGCCTCGCCGCCCTCCTGGCCCTTGCATTTTTACCATGCCATTAAAATGCTTGTCAGCTCATTCAAGGATAGAAAATTGTTGCAAACAAAAGGATCCAGAATTCGGCTTACACAGGGAGAAAAAAGTGCCGCTTCAGACCAACTCGCTCCTGGGATCCGTGAGCATTCCAGCCACTAAATGCATGAATCTAAAGCTCTTAGGGATGCAGTGTAGATCCAAGGACATGGGCGCAGGAGAATATAGTGGTGTGATATTCTTCATTCTGACGCCCGGCACGAGCCGCCCAATCACGGCCATCGGCCTGGAATCCGGATGCAGAGATAATGGCAGAATTGATGGTCATATTTTACAGTGGGTCATGGCAGAGCAGAGTGTTGAACATTGTAATTACAAGTTTGGTGGAGGGGAGAGATGTGAAGAGAGGATTCCTCATCTAAGCGGCTGTGTTCCTATCAGCCGCAATTTAGTTTGTAAGGAAAGTAAAGGTGCTGCCCATCTCCATCTAGTCTTGTTTCCCTCTCACTTTGCATCTCGCACATTGATCAAAGATGTAACAACTTTTTTTGATGCTCAGTTGTTAGGAAGAACTTCAGTATTAGTCACAAGTCAAAGATCAGCGGCCTGGCCATTCTCTCTAATTAACCCAGCATACACACACTCACTCATACACACATGCACAGCAGAGTGCCCCATACCGCCACCCCTGAATACAGAGCTGGAGGAAGGAGACGGGGAGGGCCACATCAAAGCGGAGAGAGAAAGAGTAAAGGAAGAAGAGAGACAAACAGATAGACTTAGGGCTTCTTTCCCACTGACATGTTCCTTCAGGCCACAGCACTGGCATCCTCACATCCCCAATCTCTTCCTGTATCTTGTCCTCAGATCCCAGAGCAACCAGAGGCACACAACATGGAGAGTGCTATCTGTCAAATATCTGACACGTTCAAAAAAGAGGAGCTATGATAGAGGTATTTCATGCATGAGCATCTATGTGTGTGTGTGTTTGTGTATGCATGTGGCAACCAGGTGGAACATCACCTCCTCGCCTGTGCAATCCCACAGGCTCCTCTGGGTGTCCTCGTCCCCTGTCCCCTGGCTGGACATTAGCATTCATAGAGCCAGTAGGCCGTGTCATTCTCCATGCCGCCTCCCATTGAGATGTGCTGAGAGGTTCCAGCTGCTACCCCGCAGGTCACCCGCTCCGGCTCTTACTCAGACAGTTCAATGACCGCTGCAATATTTACGCAATAGATCACAATTATTACTGTAGTGTATTGATCGTATGCAGATGAGGCTAACCTTGTGCATGGATCAGTGAGGGAGGTTAGCGAGCGCTTCGCACCCTCCCTGCATGCTGAACGTGGGTTATCGCCTCCCAGTTTAGCTCTTCAAACACATTGATGCTGAAATCTCACATTTGTTCACGCAAACAGTGATTAAGATCTTTTAGGTCAGGGCGCATTGTTTCTGCTTAATATTTATATTGCTCAGTATCTCTTAGATCATAATAGAGGGAGATTGTAATCAGTGCATGCTTCTGTTGCTCTCGTTGTTTTTGTTCTTTGTCTAGCGTACTTCCAAACGTTGCCTTTAACAACTGAGGTGGCAGTACTATAACACTACCATGTTACAATGATTGTACAGATGGTAATGGTAGATTGATACAGTATATATAAGATTTTGATGAATCCGTTTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322180 lncRNA downstream 10430 661456 ~ 661796 (-) True G284246
TU322174 lncRNA downstream 23054 648952 ~ 649172 (-) True G284240
TU322173 lncRNA downstream 26034 645960 ~ 646192 (-) True G284239
TU322170 lncRNA downstream 30260 641572 ~ 641966 (-) True G284236
TU322168 lncRNA downstream 36881 633745 ~ 635345 (-) True G284234
TU323561 lncRNA upstream 49848 803119 ~ 803431 (-) True G285471
TU323572 lncRNA upstream 67544 820815 ~ 821032 (-) True G285482
TU323543 lncRNA upstream 248580 1001851 ~ 1006584 (-) True G285454
TU323591 lncRNA upstream 390796 1144067 ~ 1144334 (-) True G285501
TU323545 lncRNA upstream 395307 1148578 ~ 1148950 (-) True G285455
CI01000072_00395219_00398674.mRNA mRNA downstream 273482 395196 ~ 398744 (-) True CI01000072_00395219_00398674
CI01000072_00390666_00393574.mRNA mRNA downstream 278314 390454 ~ 393912 (-) True CI01000072_00390666_00393574
CI01000072_00384630_00389183.mRNA mRNA downstream 282905 383909 ~ 389321 (-) True CI01000072_00384630_00389183
CI01000072_00353460_00366394.mRNA mRNA downstream 305643 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00326699_00334092.mRNA mRNA downstream 337631 325335 ~ 334595 (-) True CI01000072_00326699_00334092
CI01000072_00812929_00817837.mRNA mRNA upstream 59396 812667 ~ 817868 (-) True CI01000072_00812929_00817837
CI01000072_00824625_00842268.mRNA mRNA upstream 69823 823094 ~ 842873 (-) True CI01000072_00824625_00842268
CI01000072_00859483_00865880.mRNA mRNA upstream 105918 859189 ~ 865880 (-) True CI01000072_00859483_00865880
CI01000072_00894580_01108625.mRNA mRNA upstream 141309 894580 ~ 1108625 (-) True CI01000072_00894580_01108625
CI01000072_01126495_01134364.mRNA mRNA upstream 373192 1126463 ~ 1134364 (-) True CI01000072_01126495_01134364
TU322054 other downstream 387947 283623 ~ 283764 (-) True G284127
TU323625 other upstream 582236 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 840840 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 840840 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1252280 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 1414777 2168048 ~ 2170658 (-) True G285752

Expression Profile