RNA id: TU322170


Basic Information

Item Value
RNA id TU322170
length 395
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G284236
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 641572 ~ 641966 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCCCCTGTAATTTGTGTGAAAAGGAATAAAAATTGTTGGCGCTTTACTGCGATTTCATATGGAATATGAATATGTATAGGTACATTTTTGCTAAAAAGCTGTTCCAGTGAGCCCTTGCTATAGATGGACTATCACACTATACATGATTCTGTTGTTTCTTCAGATGTCTTTGCCAGAATAAAAATCAGCTAAAATGTTCATTGTATGTCATTGGGTTTGTGCTATGCACATGATGATGATTGATAGTATAAGAGCTGAATGATTGAAATAGATTTGTTTTTTTTCTTTTTAAAACATCTCACCTTCTTACAAGACATTTAAAATGCAATGTATGTGTTGATAAGCTTTGGAATCAATAACAACAACAGAGAGAGAAATCCCTCAGTTAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322168 lncRNA downstream 6227 633745 ~ 635345 (-) True G284234
TU322165 lncRNA downstream 10206 622038 ~ 631366 (-) True G284231
TU322166 lncRNA downstream 19734 620915 ~ 621838 (-) True G284232
TU322103 lncRNA downstream 216205 425158 ~ 425367 (-) True G284169
TU322096 lncRNA downstream 232746 408432 ~ 408826 (-) True G284162
TU322173 lncRNA upstream 3994 645960 ~ 646192 (-) True G284239
TU322174 lncRNA upstream 6986 648952 ~ 649172 (-) True G284240
TU322180 lncRNA upstream 19490 661456 ~ 661796 (-) True G284246
TU322206 lncRNA upstream 55184 697150 ~ 697414 (-) True G284272
TU322214 lncRNA upstream 70520 712486 ~ 715787 (-) True G284279
CI01000072_00395219_00398674.mRNA mRNA downstream 242828 395196 ~ 398744 (-) True CI01000072_00395219_00398674
CI01000072_00390666_00393574.mRNA mRNA downstream 247660 390454 ~ 393912 (-) True CI01000072_00390666_00393574
CI01000072_00384630_00389183.mRNA mRNA downstream 252251 383909 ~ 389321 (-) True CI01000072_00384630_00389183
CI01000072_00353460_00366394.mRNA mRNA downstream 274989 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00326699_00334092.mRNA mRNA downstream 306977 325335 ~ 334595 (-) True CI01000072_00326699_00334092
CI01000072_00672699_00753165.mRNA mRNA upstream 30260 672226 ~ 753271 (-) True CI01000072_00672699_00753165
CI01000072_00812929_00817837.mRNA mRNA upstream 170701 812667 ~ 817868 (-) True CI01000072_00812929_00817837
CI01000072_00824625_00842268.mRNA mRNA upstream 181128 823094 ~ 842873 (-) True CI01000072_00824625_00842268
CI01000072_00859483_00865880.mRNA mRNA upstream 217223 859189 ~ 865880 (-) True CI01000072_00859483_00865880
CI01000072_00894580_01108625.mRNA mRNA upstream 252614 894580 ~ 1108625 (-) True CI01000072_00894580_01108625
TU322054 other downstream 357293 283623 ~ 283764 (-) True G284127
TU323625 other upstream 693541 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 952145 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 952145 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1363585 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 1526082 2168048 ~ 2170658 (-) True G285752

Expression Profile