CI01000072_00395219_00398674 (CRYBB1L3)


Basic Information

Item Value
gene id CI01000072_00395219_00398674
gene name CRYBB1L3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 395196 ~ 398744 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00395219_00398674.mRNA
AGAATTAATCTTGATTCAGTATTTCATTTAAGCTCAACTTCTCTCTGTTCCATCATTTGCAGCTTCAGCCATGTCACATACTGCTGTGCAAGGAAGTATGGGGAGTCGCTATGCCACGGGAATGAGCTCCCAAAGAATATACCTGTTTGAGTACGAGAATTTCCAAGGGCGCATGATGGAGCTGAGTGGAGAGTGCCGTAACATTTGTGACAAGGGGCTAAACCGTGTGGGCTCCATCAGAGTGGAGTGTGGGCCATGGGTGGGTTTTGAGCAACAGGATATGACTGGTGAGATGTTCATGCTGGAGAGGGGAGAATACCCTCGCTGGGACACTTGGTCCAACAGCTACCGATGTGATCGCCTCATGTCTGTCCGGCCTGTCAGAATGGACCCACAGGACCATAACATCTGTCTGTATGAGTGCATGAACTTTGATGGTCGTAAGATGGAGGTTTCTGATGAGGACATCCCAAGTTTGTGGTGCTATGGCTTCCAGGACAGAGTCGCCAGCATTCAAGTAAATGGTGGAACTTGGGTGGGATACCAGTACCCTGGCTACCGTGGATATCAGTACCTGTTTGAATTTGGATCCTATAAACACTGGAATGAATGGGCTGCAAAACCCTTCGAGGAACATTCATTGAACCAGAAGGAGGTGCAATTCAGCACTTCAGCGTGCTCAGCCTTCTCCTGCTTCATCACACCACATCTTCTAGAACCTAGATGTTCAGCTGGTATTGTGACGAACAGAGTTCTCAACCTGGCAGGCCGGATGGGAGAAGAGAACAGAATTTTCCTCTTCTCTCTCCAGGAACAGATTTCAGACCTCCTTTATTTTCAAAATAGCCTAGAGGAGATCCTTCCACACTTTATCTTTCTCAGGGATGCTGGCATCTAAAAACACATTTCCTAGAAAATAAA

Function

symbol description
crybb1l3 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

NR:

description
LOC553473 protein, partial

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00395219_00398674.mRNA True 921 mRNA 0.47 6 395196 398744

Neighbor

gene id symbol gene type direction distance location
CI01000072_00390666_00393574 NA coding downstream 1284 390454 ~ 393912 (-)
CI01000072_00384630_00389183 UNC119B, UNC119, UNC119A coding downstream 5875 383909 ~ 389321 (-)
CI01000072_00353460_00366394 SLC46A1 coding downstream 28613 353266 ~ 366583 (-)
CI01000072_00326699_00334092 SLC46A1 coding downstream 60601 325335 ~ 334595 (-)
CI01000072_00281180_00284855 NA coding downstream 110014 280703 ~ 285182 (-)
CI01000072_00672699_00753165 NA coding upstream 273482 672226 ~ 753271 (-)
CI01000072_00812929_00817837 NA coding upstream 413923 812667 ~ 817868 (-)
CI01000072_00824625_00842268 TBX4 coding upstream 424350 823094 ~ 842873 (-)
CI01000072_00859483_00865880 TBX2, TBX2B coding upstream 460445 859189 ~ 865880 (-)
CI01000072_00894580_01108625 BCAS3 coding upstream 495836 894580 ~ 1108625 (-)
G284142 NA non-coding downstream 42636 322832 ~ 352560 (-)
G284124 NA non-coding downstream 97944 290288 ~ 297252 (-)
G283916 NA non-coding downstream 117359 276194 ~ 277837 (-)
G283914 NA non-coding downstream 120937 273932 ~ 274259 (-)
G284162 NA non-coding upstream 9688 408432 ~ 408826 (-)
G284169 NA non-coding upstream 26414 425158 ~ 425367 (-)
G284232 NA non-coding upstream 222171 620915 ~ 621838 (-)
G284231 NA non-coding upstream 223294 622038 ~ 631366 (-)
G284234 NA non-coding upstream 235001 633745 ~ 635345 (-)
G285534 NA other upstream 936763 1335507 ~ 1354932 (-)
CI01000072_01596829_01610605 NA other upstream 1195367 1594111 ~ 1627895 (-)
G285766 NA other upstream 1606807 2005551 ~ 2008309 (-)
G285752 NA other upstream 1769304 2168048 ~ 2170658 (-)
G286005 NA other upstream 2595025 2993769 ~ 2999495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location