G284124


Basic Information

Item Value
gene id G284124
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 290288 ~ 297252 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU322046
TGTTTTTCATTTTTGCATAAATATGTGGCATGCAGTTGCTTCAAACAATGATATAAAGCTATTCAAAACATCATTCCATGTAATTGTGATAATCGTAATTAATAATCGCAATTACAATTTCAAGAGAATAATAAACAATTATGATTTTTGTCGTAATCGTGCAGCCCTACCGGGTGCTGAATTGGCCTGGCTGCAGTCCAGATCTTTCACCTATAGAAAAATACGTCAAAGGCGACCACGAACTCTTCAGCAGCTGGAAACCTATATCAGGCAAGAATGGGAACAAATTCCAACACCAAAACTCCAGAAACTCATAACCGATGCTCAGATGTCTTCACACTCTTTTGAAAAGAAGAGGAGATGCTACACTATGATAAACATGCCCCCGTCCCAACTATTTTGAGACCTGTAGCAGGCATCAAATTTGAAATGAGCTCATTTTGTGCATAAAATTGCAAAATTTAAACATTTGTTATGTTATCTGTGTTCTATTGTGAATAAAATATTGGCTCATGTGATGTGAAAGTCTTTTAGTTTTCATTTCATTCAAATAATAATAAAAAAAAACGTTCCAACATTTCCGGAATTCGGGTTGTATTATGTATAAAATTCAACCCGCCAAAGTGGCTAGAAGGGGTTACACGCCACTGCTGAAATCCACCCACACTGTCGGTGGATTTTGGCGGGTGTTAATGTCAAAGTCTGGTCATTAGGCATGCATGTGTATAGATATAACTCACAAAATTTATTTTACTTACCGTTTTCTGCTCTGTAGCATTTGCGAGGAGTTTTAGGAAGCCATCAAGCCAGTCAGAGTTTTCCTTTGTCTTCTTCTCGTCTAAAAAATAAAAAAGCCTGACCGCTTTGGCACTGGTGAGCTCTGAGCTATTTGGCTTTAACTCTACACCGCCGATGGTTGTTCCCAAAAACGTGCCCTTATTCATCGGATATTTTATGTTTGAAGAAACGATTTCAGTAGCATTGTAATTTATAATGTCTAAAACTGCGTTTGACATGCACCTTCCCTTTGTTTTGGCACAGAGGTTTTCAAAAGTGTTTCCTGTCGTTATACTTTTCACTCGTCTGTCTAGCTCTATAATGTCATTAAAAGCTGCTTCAGTTAATATATTTTCTCCATGCAAGTCTGTGATGATCAAAGAGGCATAAGTGCCTTCAGACACAAGCCGAAACTGAGAAAACTCTTCAGATTGTGGTAAATTTTCCACCACAATTGCTCTTTCCAACTTGGCAGGTCCATTGACAGGCGTAAACTGGTCTTCAATATCATTGGCCTTCCTCTCCTGAAGAAAAATGAAACCAGCTCCGAGGGAAGCAGCTACACATATAGCTGATAAAAGAAACACACATGGATATCTACCAACAACATGACCAAGCTTTTCAAATGCCAGAGACAGGGGCCTTTCGATGCAGTCTGTTTTACACTTCGCCATCCTCTAGATTCACTACAGCAGTCTCGTCCTTCTTCAAAGCCCCAGCAACACCAGATAGTCCTTGGAAACTGGTGAAGTTACGTCAAATTTTTTTTTAATAAGTTGGGCACAAAAATACAGGTCACATCTGTGAGCAACTGGGTTTGTGGTCTGAAATTTTCTTCACAAACGCACACAGCTCTGAAGTTTAGACGCCTACCGTTACACAGCTTGACTTGTGCGCAATGGGCGGTGTACGGAGCGCATCTTAAAGGGAAAGCTGTACAGGAATCGTTCAAGAGAAACACGTGTGCCCTCTATTGGTTAAGTATCAAAGTGCAATTAAACGGATAGACTTTCCTACGCCCTTTTTTATTTTCTGAAGACAGAACAAGTAGCAAACATAGCATAGCATAAAATAGTGCAAATCAAAATGTGGCATTAATTAGTAACAGGGGGTCCGAAAATTATATAATATTTTAAACATGTTAATGACTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU322046 True 1933 lncRNA 0.39 2 290288 297252

Neighbor

gene id symbol gene type direction distance location
CI01000072_00281180_00284855 NA coding downstream 5106 280703 ~ 285182 (-)
CI01000072_00270378_00272531 NA coding downstream 17611 270187 ~ 272677 (-)
CI01000072_00235619_00238502 NA coding downstream 51786 234869 ~ 238502 (-)
CI01000072_00208491_00215135 NA coding downstream 75153 207655 ~ 215135 (-)
CI01000072_00178958_00188889 NA coding downstream 101399 178879 ~ 188889 (-)
CI01000072_00326699_00334092 SLC46A1 coding upstream 28083 325335 ~ 334595 (-)
CI01000072_00353460_00366394 SLC46A1 coding upstream 56014 353266 ~ 366583 (-)
CI01000072_00384630_00389183 UNC119B, UNC119, UNC119A coding upstream 86657 383909 ~ 389321 (-)
CI01000072_00390666_00393574 NA coding upstream 93202 390454 ~ 393912 (-)
CI01000072_00395219_00398674 CRYBB1L3 coding upstream 97944 395196 ~ 398744 (-)
G283916 NA non-coding downstream 12451 276194 ~ 277837 (-)
G283914 NA non-coding downstream 16029 273932 ~ 274259 (-)
G283896 NA non-coding downstream 38097 251841 ~ 252191 (-)
G283845 NA non-coding downstream 46382 240602 ~ 243906 (-)
G284142 NA non-coding upstream 25580 322832 ~ 352560 (-)
G284162 NA non-coding upstream 111180 408432 ~ 408826 (-)
G284169 NA non-coding upstream 127906 425158 ~ 425367 (-)
G284232 NA non-coding upstream 323663 620915 ~ 621838 (-)
G284231 NA non-coding upstream 324786 622038 ~ 631366 (-)
G285534 NA other upstream 1038255 1335507 ~ 1354932 (-)
CI01000072_01596829_01610605 NA other upstream 1296859 1594111 ~ 1627895 (-)
G285766 NA other upstream 1708299 2005551 ~ 2008309 (-)
G285752 NA other upstream 1870796 2168048 ~ 2170658 (-)
G286005 NA other upstream 2696517 2993769 ~ 2999495 (-)

Expression


Co-expression Network