G283845


Basic Information

Item Value
gene id G283845
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 240602 ~ 243906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU321714
GCGCTGCTTTCAGCGTGAGCATATGAGAGAGAGTCAGAGCAGATCAGCACAGACCGTTTCTCCTGAAAATCCATTCATCTAACTGGAAATGTGATTGAGTGCGCTGAAAGTGGAGCCTTTGAAGTCGATGCATCAGCCTGAAGTGATGTCGTCAGAGAGAGAGAGAAGAGAGAGACGGAGCGGATCCCAGAGTGCTGAAGCACTACCCAAAGGAAAAGGACAGTGATTCCCAAACCACAGAGAAATGTTGCCCGAAAGACTGTTGATGAGTATCAAGCACAAGCCCTTGACAGAGACTCAGAAGAGGCTGAAAAAAATGGAGGAAAATGAAAAATTGAGAAATGACAACAAAAAAAGCTACCAAATCTGATAAATGAAGTGAAGATGGCCCTGAGGTCTCAGTTTTCCTCAGCATCAGTCAGCTCTGACTTGGAAGATGGGACAGGATTTGCCACAGAGTAATTACAGAGCCCTTCCAACAGAACAGGAGCAACGTTGCACAAAGTGTCTTCATATTGTGCCCGCCAGCATTGGTGCAACCATCAATGCCAAACTTACTGAAGTTAGGGGGAAGAAAACACAAAAACATCTGAAAACCTTTAATGGTCTTTGATGATTGATAGCCATGACAGTGTGTTCGAGGTATTTTGTTGTTTGGGTGTGTGTGTGTTTTGCTTTCGCAAAGTTCAGTTTGATATCAAGTTGTAATTCTAAATTACTCTTGTGGAGTATAATTTGATTGTGTCTCTTTGATTGTGTTGAAATAAAAGTATTTCTGATGCAAATTTGTGCAAGTAATTGACTGAAATCATATATGATTTGTATGTGCAGAGATATTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU321714 True 839 lncRNA 0.42 4 240602 243906

Neighbor

gene id symbol gene type direction distance location
CI01000072_00235619_00238502 NA coding downstream 2100 234869 ~ 238502 (-)
CI01000072_00208491_00215135 NA coding downstream 25467 207655 ~ 215135 (-)
CI01000072_00178958_00188889 NA coding downstream 51713 178879 ~ 188889 (-)
CI01000072_00153905_00173611 NA coding downstream 66412 153335 ~ 174190 (-)
CI01000072_00099537_00100614 NA coding downstream 139984 99168 ~ 100618 (-)
CI01000072_00270378_00272531 NA coding upstream 26281 270187 ~ 272677 (-)
CI01000072_00281180_00284855 NA coding upstream 36797 280703 ~ 285182 (-)
CI01000072_00326699_00334092 SLC46A1 coding upstream 81429 325335 ~ 334595 (-)
CI01000072_00353460_00366394 SLC46A1 coding upstream 109360 353266 ~ 366583 (-)
CI01000072_00384630_00389183 UNC119B, UNC119, UNC119A coding upstream 140003 383909 ~ 389321 (-)
G283888 NA non-coding downstream 8308 231852 ~ 232294 (-)
G283881 NA non-coding downstream 16367 223420 ~ 224235 (-)
G283873 NA non-coding downstream 38228 201959 ~ 202374 (-)
G283844 NA non-coding downstream 89413 148162 ~ 151189 (-)
G283868 NA non-coding downstream 100146 140164 ~ 140456 (-)
G283896 NA non-coding upstream 7935 251841 ~ 252191 (-)
G283914 NA non-coding upstream 30026 273932 ~ 274259 (-)
G283916 NA non-coding upstream 32288 276194 ~ 277837 (-)
G284124 NA non-coding upstream 46382 290288 ~ 297252 (-)
G285534 NA other upstream 1091601 1335507 ~ 1354932 (-)
CI01000072_01596829_01610605 NA other upstream 1350205 1594111 ~ 1627895 (-)
G285766 NA other upstream 1761645 2005551 ~ 2008309 (-)
G285752 NA other upstream 1924142 2168048 ~ 2170658 (-)

Expression


Co-expression Network