RNA id: TU321714


Basic Information

Item Value
RNA id TU321714
length 839
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G283845
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 240602 ~ 243906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGCTGCTTTCAGCGTGAGCATATGAGAGAGAGTCAGAGCAGATCAGCACAGACCGTTTCTCCTGAAAATCCATTCATCTAACTGGAAATGTGATTGAGTGCGCTGAAAGTGGAGCCTTTGAAGTCGATGCATCAGCCTGAAGTGATGTCGTCAGAGAGAGAGAGAAGAGAGAGACGGAGCGGATCCCAGAGTGCTGAAGCACTACCCAAAGGAAAAGGACAGTGATTCCCAAACCACAGAGAAATGTTGCCCGAAAGACTGTTGATGAGTATCAAGCACAAGCCCTTGACAGAGACTCAGAAGAGGCTGAAAAAAATGGAGGAAAATGAAAAATTGAGAAATGACAACAAAAAAAGCTACCAAATCTGATAAATGAAGTGAAGATGGCCCTGAGGTCTCAGTTTTCCTCAGCATCAGTCAGCTCTGACTTGGAAGATGGGACAGGATTTGCCACAGAGTAATTACAGAGCCCTTCCAACAGAACAGGAGCAACGTTGCACAAAGTGTCTTCATATTGTGCCCGCCAGCATTGGTGCAACCATCAATGCCAAACTTACTGAAGTTAGGGGGAAGAAAACACAAAAACATCTGAAAACCTTTAATGGTCTTTGATGATTGATAGCCATGACAGTGTGTTCGAGGTATTTTGTTGTTTGGGTGTGTGTGTGTTTTGCTTTCGCAAAGTTCAGTTTGATATCAAGTTGTAATTCTAAATTACTCTTGTGGAGTATAATTTGATTGTGTCTCTTTGATTGTGTTGAAATAAAAGTATTTCTGATGCAAATTTGTGCAAGTAATTGACTGAAATCATATATGATTTGTATGTGCAGAGATATTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321759 lncRNA downstream 8308 231852 ~ 232294 (-) True G283888
TU321752 lncRNA downstream 16367 223420 ~ 224235 (-) True G283881
TU321744 lncRNA downstream 38228 201959 ~ 202374 (-) True G283873
TU321711 lncRNA downstream 89413 148162 ~ 151189 (-) True G283844
TU321739 lncRNA downstream 100146 140164 ~ 140456 (-) True G283868
TU321767 lncRNA upstream 7935 251841 ~ 252191 (-) True G283896
TU321790 lncRNA upstream 30026 273932 ~ 274259 (-) True G283914
TU321794 lncRNA upstream 32288 276194 ~ 277837 (-) True G283916
TU322057 lncRNA upstream 37109 281015 ~ 281462 (-) False CI01000072_00281180_00284855
TU322055 lncRNA upstream 39717 283623 ~ 284279 (-) False CI01000072_00281180_00284855
CI01000072_00235619_00238502.mRNA mRNA downstream 2100 234869 ~ 238502 (-) True CI01000072_00235619_00238502
CI01000072_00208491_00215135.mRNA mRNA downstream 25467 207655 ~ 215135 (-) True CI01000072_00208491_00215135
CI01000072_00178958_00188889.mRNA mRNA downstream 51713 178879 ~ 188889 (-) True CI01000072_00178958_00188889
CI01000072_00153905_00173611.mRNA mRNA downstream 66412 153335 ~ 174190 (-) True CI01000072_00153905_00173611
CI01000072_00099537_00100614.mRNA mRNA downstream 139984 99168 ~ 100618 (-) True CI01000072_00099537_00100614
CI01000072_00270378_00272531.mRNA mRNA upstream 26281 270187 ~ 272677 (-) True CI01000072_00270378_00272531
CI01000072_00281180_00284855.mRNA mRNA upstream 36797 280703 ~ 285182 (-) False CI01000072_00281180_00284855
CI01000072_00326699_00334092.mRNA mRNA upstream 81429 325335 ~ 334595 (-) True CI01000072_00326699_00334092
CI01000072_00353460_00366394.mRNA mRNA upstream 109360 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00384630_00389183.mRNA mRNA upstream 140003 383909 ~ 389321 (-) True CI01000072_00384630_00389183
TU322054 other upstream 39717 283623 ~ 283764 (-) True G284127
TU323625 other upstream 1091601 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 1350205 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 1350205 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1761645 2005551 ~ 2008309 (-) True G285766

Expression Profile