RNA id: CI01000072_00178958_00188889.mRNA


Basic Information

Item Value
RNA id CI01000072_00178958_00188889.mRNA
length 1735
RNA type mRNA
GC content 0.52
exon number 9
gene id CI01000072_00178958_00188889
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 178879 ~ 188889 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGCTGGAGGTTACAGCAGTGGATGTAGGAGATACGCCTGCCTTACCTGAACACCTCTCGCTCCCACTCATCACTGATGCTCGTTCATCACACTGGCTCTGTATATACTCAGACAGGTGTCGTAATAATAATCTGCATCAAGCTGCTGGAACCAATGAGATGTTCCTCTGGCACATCATTGCACGCAAAGCCGGACTGTACCCCGCTCTGCCCTCGAGCTCCCCACAGCTCTGTCCACTGCATCAGCAGGTGCTGGAGCTGTACTGCTGTGATGATAAACACTGCATCTGTGAGGAGTGTAGCCTTCTGGGACACAAGGGTCATCAGGTGGTGCGGCCGGATGAAGAGCGACAGAAGATTCAGAGCTCAATGCAGAAGCTGATGATGGACAGTCAGGCCGTCTTCATGGATGTGTTGAGGAGCGTTGATCTCAGCCGCTCTCAGGCGCTCGAGCTGCTTCAGGCTCATGAGAAATCGTCCTCGAGCCACATACAGGCCCGAACCTACCAGATACAGCAGGAGATCGCCCATTTGCACCGGAGACAAGAGGAGCTGAAGACACTGGACAGCATTCAGGATCCCATCACCTTCCTGAACACATTCATGGCGGTGGACTCCATGGATCCGGCGGGAAGTGTAGCGATGGAGATATTGACTCCAGAGTCAGTGATATCAGGAGTCAGATCGTCTCTGGATGCTTTCAGAGAGGGGGCAGAAAATCTCACCAAAACCAGCCTGGCCAGTATCTTTAGAGTTGTCAATGATGCGGCTGCTCTGGCACAATCATCCAGTCAGTCATGTGACGGAGGCGTCATCTCCAGCGAATCACAGCCGCCCTCACAAACCCCAGCTTTTCAGATTACAGAAGTAAAGTCTGTCTCTGTGAAACCGGATGTTAAACCCAAAGTCAAAGCTTTGTCTCCTGCAACACAAGAACAGCACAAGAAACAGGACTGTCCCTCTGCCAATCCTATGGAGGGAACAGCATCCTGTTGTCTGTCTAAACCAGCTCCTAAAACCAGAGAGGAAATGCTTAAATTATTTAATGGTGTGTATTTTCTTTCAGTCCGCATCGAGCCTACACTAGATCACAACAGTGCTTTCCGTCAGATTCGTTTATCTGATGGATATCGCAAGGCGACTCTCTGCGCGGAGAACCAGAGTTATCCGGATCATCCGGACCGCTTCGTGTACTGGAGGCAGGTGATGTGTGTGGAGCCGCTGGCCGGGAGCCCGTACTACTGGGAGGTGGAGTGGACGGGACAGAGGGTAACAGACTACTCCAACATTATAATTCACAAAAGCCTTATGTTCAAGGTGACTGTTGGCGTGGCGTATAAAGACATGGAGCGCTCTGCAGCCGAGGACAGCGCCAGACTGGGCCACAACACACGATCCTGGAGCCTGTACTGGTCCGGCAAGGCTTTCTCTATGTGGCATGCTGGGAAAGAAACCGCACTGGCTGGTCCCAAAGCCAAGCGTATCGGGGTTTACCTGGACCAGCAGGCCGGCGTACTGGCTTTCTATCGAGTCTCGCACAATCAGGCCCAGGAGATATGTTGCGTTCACACGGATTTCGACGCTCCTCTCTTCGCCAGTTTCCGCTTCTGGTCTGGAGTCGGCTCCTCCATCACTATCTGTGAGCTCAACTGAAGAGAAAAGAAGTACAGAAGCATATGCCTTTATAGCTTTCTGTATCTGTTTTTCATCACAACTTGACTGTCAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321711 lncRNA downstream 27690 148162 ~ 151189 (-) True G283844
TU321739 lncRNA downstream 38423 140164 ~ 140456 (-) True G283868
TU321737 lncRNA downstream 46598 132053 ~ 132281 (-) True G283866
TU321744 lncRNA upstream 13070 201959 ~ 202374 (-) True G283873
TU321752 lncRNA upstream 34531 223420 ~ 224235 (-) True G283881
TU321759 lncRNA upstream 42963 231852 ~ 232294 (-) True G283888
TU321714 lncRNA upstream 51713 240602 ~ 243906 (-) True G283845
TU321767 lncRNA upstream 62952 251841 ~ 252191 (-) True G283896
CI01000072_00153905_00173611.mRNA mRNA downstream 4689 153335 ~ 174190 (-) True CI01000072_00153905_00173611
CI01000072_00099537_00100614.mRNA mRNA downstream 78261 99168 ~ 100618 (-) True CI01000072_00099537_00100614
CI01000072_00208491_00215135.mRNA mRNA upstream 18766 207655 ~ 215135 (-) True CI01000072_00208491_00215135
CI01000072_00235619_00238502.mRNA mRNA upstream 45980 234869 ~ 238502 (-) True CI01000072_00235619_00238502
CI01000072_00270378_00272531.mRNA mRNA upstream 81298 270187 ~ 272677 (-) True CI01000072_00270378_00272531
CI01000072_00281180_00284855.mRNA mRNA upstream 91814 280703 ~ 285182 (-) False CI01000072_00281180_00284855
CI01000072_00326699_00334092.mRNA mRNA upstream 136446 325335 ~ 334595 (-) True CI01000072_00326699_00334092
TU322054 other upstream 94734 283623 ~ 283764 (-) True G284127
TU323625 other upstream 1146618 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 1405222 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 1405222 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1816662 2005551 ~ 2008309 (-) True G285766

Expression Profile