RNA id: TU321752


Basic Information

Item Value
RNA id TU321752
length 816
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G283881
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 223420 ~ 224235 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCACTTTCAAAGTGCTTTGAAATCGCCCTCATATTTTTACCCGATTTGCTTCAAACTTCGTCAGAATAATGCCAAGACACTGCAGATGTACACCTGTGAAAGAATTCTTGATATCTTGAATACTGTTGTCATGGAAACGCATCAAACTTTAATATTCTTTTTGGGTGTTTTTGAGACTCTTAGCATGCTTCAAATTGCATGAAACGCGACACACACATTAGAGTTGTCGGCCAGTAGACATGGGCAATGCAGATTGGGCATGTAGGAGGGGTTCTATAGCGCAGTCTTTTGACAAAAGTGGGGGGTTAATTTTACCTACAGTCACCAAACTCTGAGCGTATATTGTTCTCATCGAGCCGAACAACTTTCTAATCACAAAAGTCAAAATATTTAATCCAGTTCTATCTAGTTGAAGATCATATTCATTGCACCGGTATGGGATGGTTTGTTGGGAATCTGTGCCACTGGCTTTCGTGTCGGTGAGACCTTCACAGGGGATGATCTAGTTGACACAATCTCTGCTGACACTTCAGGGCTGCGTTGTTGTCGTCGTGTCTGGGTGCAGGTCCTCAATCTCACCTGGATACAGCCTGGATCCGGCTGACTAGGGTAAACCTCGGGATAAACAGAGAGACTAATATTAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTACATATGGTGTTATAGGAAGTGTTCCCAGTTCCGGCTGACCTAATTTATGCAGCCTAACAATTCTTTTAATGGATGTGAAAACAAATTGATAATGTGTTATGTGTATGTCAGGTTAAAGAGATATGTTTTTAGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321744 lncRNA downstream 21046 201959 ~ 202374 (-) True G283873
TU321711 lncRNA downstream 72231 148162 ~ 151189 (-) True G283844
TU321739 lncRNA downstream 82964 140164 ~ 140456 (-) True G283868
TU321737 lncRNA downstream 91139 132053 ~ 132281 (-) True G283866
TU321759 lncRNA upstream 7617 231852 ~ 232294 (-) True G283888
TU321714 lncRNA upstream 16367 240602 ~ 243906 (-) True G283845
TU321767 lncRNA upstream 27606 251841 ~ 252191 (-) True G283896
TU321790 lncRNA upstream 49697 273932 ~ 274259 (-) True G283914
TU321794 lncRNA upstream 51959 276194 ~ 277837 (-) True G283916
CI01000072_00208491_00215135.mRNA mRNA downstream 8285 207655 ~ 215135 (-) True CI01000072_00208491_00215135
CI01000072_00178958_00188889.mRNA mRNA downstream 34531 178879 ~ 188889 (-) True CI01000072_00178958_00188889
CI01000072_00153905_00173611.mRNA mRNA downstream 49230 153335 ~ 174190 (-) True CI01000072_00153905_00173611
CI01000072_00099537_00100614.mRNA mRNA downstream 122802 99168 ~ 100618 (-) True CI01000072_00099537_00100614
CI01000072_00235619_00238502.mRNA mRNA upstream 10634 234869 ~ 238502 (-) True CI01000072_00235619_00238502
CI01000072_00270378_00272531.mRNA mRNA upstream 45952 270187 ~ 272677 (-) True CI01000072_00270378_00272531
CI01000072_00281180_00284855.mRNA mRNA upstream 56468 280703 ~ 285182 (-) False CI01000072_00281180_00284855
CI01000072_00326699_00334092.mRNA mRNA upstream 101100 325335 ~ 334595 (-) True CI01000072_00326699_00334092
CI01000072_00353460_00366394.mRNA mRNA upstream 129031 353266 ~ 366583 (-) True CI01000072_00353460_00366394
TU322054 other upstream 59388 283623 ~ 283764 (-) True G284127
TU323625 other upstream 1111272 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 1369876 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 1369876 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1781316 2005551 ~ 2008309 (-) True G285766

Expression Profile